RNA id: AMCG00018990



Basic Information


Item Value
RNA id AMCG00018990
length 588
RNA type mRNA
GC content 0.67
exon number 4
gene id AMCG00018990
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 411483 ~ 414872 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGCACCCTGTGTGAGAACCCGCTGGTGCAGCACCGGCTGCAGAAGCTGCCCCTGTCCCTGGGGGACTGCAGGCTGCGAATGAGCGCCGCGCTGCACCCCTCCACCCAGGCCCTGCTGGAGAGCTCCGCCTCCAACATCAACAGCAACTGGGCCGTGGGGCTGGACCTGGCCCCCACTGGCACGGCTGTCCTGGGGGGCAGCCAGTCGCAGCTTGCCAGtTTCAGACTGGCTGAGCATCCCCGCCTCAGCGACGGATTCTCCCAGCACCTGCAGCAGCTGCCCTTGCAATACAGCTCCTTCACCAAGCACAAGTACCGGCAGCTGATTGACACCTACGGCACGCACTATGTGCGGCTCGTGCAGCTGGGCGGCCGCCTGCGCAGAATCACTGCCCCCGCGGTGTCGGCACTTCCCATCAGCGCTGGGGCAAAGCAAGCCAGCTGGCTGCAGCTGCCACAGGGCGGGGGCTACACAGCCAACGCTGGAGCGATGGGGGGGCAGGGCAGTGAGGGAGATGCAACGTGCGGCTACCCCACGACCCCGGCGCCGCCTTCGCCCTTCAGGGCACAGATGAAGGCGTACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38232 lncRNA upstream 39685 370446 ~ 371798 (+) True G30583
TU38196 lncRNA upstream 129339 227976 ~ 282144 (+) True G30549
TU38301 lncRNA downstream 28296 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 77688 492560 ~ 496520 (+) True G30619
TU38302 lncRNA downstream 79448 494320 ~ 496520 (+) False G30619
TU38383 lncRNA downstream 324354 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 594389 1009261 ~ 1026744 (+) True G30699
AMCG00018984 mRNA upstream 152192 255473 ~ 259291 (+) True AMCG00018984
AMCG00018983 mRNA upstream 156036 246098 ~ 255447 (+) True AMCG00018983
AMCG00018981 mRNA upstream 165711 237250 ~ 245772 (+) True AMCG00018981
AMCG00018980 mRNA upstream 174239 234187 ~ 237244 (+) True AMCG00018980
AMCG00018979 mRNA upstream 177335 233389 ~ 234148 (+) True AMCG00018979
AMCG00018989 mRNA downstream 45287 460159 ~ 473258 (+) True AMCG00018989
AMCG00018998 mRNA downstream 83777 498649 ~ 503431 (+) True AMCG00018998
AMCG00019000 mRNA downstream 91763 506635 ~ 514431 (+) True AMCG00019000
AMCG00018999 mRNA downstream 134644 549516 ~ 555351 (+) True AMCG00018999
AMCG00018997 mRNA downstream 144463 559335 ~ 560597 (+) True AMCG00018997
TU38241 other upstream 12811 395501 ~ 398672 (+) True G30589
TU38173 other upstream 337252 73792 ~ 74231 (+) True G30527
TU38342 other downstream 139894 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 580455 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 818622 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 838494 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1446957 1861829 ~ 1871379 (+) False AMCG00019064

Expression Profile