RNA id: TU38468


Basic Information

Item Value
RNA id TU38468
length 1453
RNA type TUCP
GC content 0.68
exon number 2
gene id AMCG00018991
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 473449 ~ 477096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCTGGGCGCGGGTTCGAGCGGCGCTGGAGGGCGGCGGGGGGGCCCTGCGCCTGCGCTGCCGGGAGCTGCGGGTGGAGGAGCTGGCCTCACCCTCCATTGCTGCTCTGTTGGCGCTGCTGCCCGAGCGGCGGGCACTGCGGGGGCTGGACCTGCGCTACAGCAGCCTGGGGGCAACCGGCCTGGCTCAGCTGCTGCCCTCCCTGGCCTCCTGCCCCGGCCTGCGCTCCCTGCGGCTGCACTACTGCAACCTGGACACGCGCAGACCGCAGCCCGGCCAGCAGGAGGCGCTGGCAGAGGTGGCACGGGGGCTGGGGGCTCTGACAGGGCTGCGGCGGCTCGGCCTCACTGCACTCAGACTGCCTGGACACCTACGCCTTCTTCTCAGCGCTCTGTCTCAGCCTCTGGAGGTGTTGGAGCTCCCCTACTTCTCCCTGAGCCCAGCTGACCTCTCCTACCTGTCCAGCAGCGCCCACGCCCCACACCTGCGCTGCCTGGACCTGAGTGAGAACCGGCTGGACCCGGCCACCCTGCCTTCCTTGACCCGCCTGCTGGCCCGGGCCTCAGGCCTTGCCCAGCTCTCGCTCTGCGGCTGCAGCCTGACGGACGGCCTGCTGGGGGCGCTGCTGCCGAGCCTGAGCCGCTGCGGTGCGCTGTGCAGCCTGGGGCTCGCCCTGAACCCCCTGACCCGGGCCGGGGTGCTGTCCCTGGGCCGTGCCGCCGCCCGCATGCCCTCCCTGCGCCTGCTGCTGTACCCCTACCCCCTGGAGAGCTACCAGGCCGAGCTGCCTGCTGCCCCCTCGAGCGCACAGCTTCTGGACTGGCCCCTGGAGGACGAGGGGGCCGTGCAGGGGGCCACGCGGGCTGAGCTGGACCGAGCGCTGCGGGAGAGCAGCCGAACCGACCTGCTGCTGACCTCTGACGCGCTGGCCTTCAGCGTGGATGCCCCCGAGGATGAGGAGTGGAGTTAAGGGCGGGGGGTTAATCTGCCCAGACGGAGCTCGGGGACCACGGAGAGACTCGTCCCCAAAGCAGGGCCAGCACCATCTCTGCCAGGCCTGATCCTCGCCTGTCTGAGGGACTGTCCAGCCTCTTTCCTTCCACAGCTGGTCAACTCTCAAGCCTCGTCctggtccagtccagtccagtccagcagggtcttagccctggtcctgagagacacagtccagtccagcagggtctcagccctggtcctgagagacacagtccagtccagcagggtctcagtccagaagggtctcagccctggtcccgcgagacacagtccagtccagcgggGTCTCAGTCCAGAAGGGTCTCAGCCCAgaagggtctcagccctggtcccgcgagacacagtccagtccagcagggtcttgGCCCTGCTTCTGGCAGTAAATCTGACTCGTCTCACAGGGCTGTGTGTTTGgtatcatttataaatgatttgttA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38452 lncRNA downstream 18807 453128 ~ 454764 (-) False AMCG00018992
TU38291 lncRNA downstream 59289 413888 ~ 414282 (-) True G30612
TU38260 lncRNA downstream 141604 323618 ~ 331967 (-) True AMCG00018988
TU38243 lncRNA downstream 150180 225374 ~ 323391 (-) False AMCG00018988
TU38247 lncRNA downstream 205644 266073 ~ 267927 (-) True G30594
TU38488 lncRNA upstream 46887 522119 ~ 523996 (-) True G30760
TU38518 lncRNA upstream 237480 712712 ~ 733413 (-) True G30784
TU38517 lncRNA upstream 252708 727940 ~ 733413 (-) False G30784
TU38533 lncRNA upstream 359226 834458 ~ 839109 (-) True G30797
TU38546 lncRNA upstream 412417 887649 ~ 894190 (-) True G30809
AMCG00018992 mRNA downstream 18812 452955 ~ 454759 (-) True AMCG00018992
AMCG00018994 mRNA downstream 55305 416156 ~ 418266 (-) True AMCG00018994
AMCG00018993 mRNA downstream 61814 405369 ~ 411757 (-) True AMCG00018993
AMCG00018995 mRNA downstream 82757 382423 ~ 390814 (-) True AMCG00018995
AMCG00018996 mRNA downstream 91499 363203 ~ 382072 (-) True AMCG00018996
AMCG00019003 mRNA upstream 2795 478027 ~ 496837 (-) True AMCG00019003
AMCG00019001 mRNA upstream 39571 514803 ~ 518847 (-) True AMCG00019001
AMCG00019002 mRNA upstream 50523 525755 ~ 534393 (-) True AMCG00019002
AMCG00019006 mRNA upstream 119543 594775 ~ 609647 (-) True AMCG00019006
AMCG00019007 mRNA upstream 139166 614398 ~ 633866 (-) True AMCG00019007
TU38469 other upstream 304 475536 ~ 477076 (-) False AMCG00018991
TU38444 other upstream 23500 498732 ~ 500189 (-) True G30729
TU38506 other upstream 143807 619039 ~ 622075 (-) False AMCG00019007
TU38514 other upstream 156460 631692 ~ 634293 (-) False AMCG00019007
TU38607 other upstream 699292 1174524 ~ 1174983 (-) True G30849

Expression Profile