RNA id: TU38452


Basic Information

Item Value
RNA id TU38452
length 573
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00018992
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 452955 ~ 454764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGAGTGTGCGGTGTGGCTACAACGAGGGGGACAGAGCTCTGGTCAAGTACTGGTGCCGAGGGACGTCCCTCCCCTCCTGTGAGACTGTGAGCCGCAGCGACTCTGCccagagagagacggacagagtgTCCATCAGAGACGACCAGAGCCAGGGGGTCTTCACTGTGACTGTGAGGAGGCTGGAGAGGGAGGATGCGGGAGAGTACTGGTGTGCGGTGAACAGAACAGGACTTCTTACTGGAGTTTGTCATCGTCTCACACTGCTTCAGGGTGCTCCTGATCTCTGGGTGAGCAGTGACAATGTGTTTGGACGGGAGGGAGAATCAGTCAGCGTCCAGTGTCACTATAATGTGCGTTTCAACACTTATGTGAAGTACTGGTGTAGAGGGGAGCACTGGAGATCCTGTCAGATTGTGAGACGCAGAGATGATGTCCCTGGAGAGACAGATGTAGTGTCCATCAGTGATGATCAAACCCAGGGAGTCTTCACTGTGACTGTGAGGAGGCTGGACGAGAGGGACAAAGGCTGGTACTGGTGTGCTATACAGATAGTGGGCTCTGATAGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38291 lncRNA downstream 38846 413888 ~ 414282 (-) True G30612
TU38260 lncRNA downstream 121161 323618 ~ 331967 (-) True AMCG00018988
TU38243 lncRNA downstream 129737 225374 ~ 323391 (-) False AMCG00018988
TU38247 lncRNA downstream 185201 266073 ~ 267927 (-) True G30594
TU38246 lncRNA downstream 193063 259434 ~ 260065 (-) True G30593
TU38488 lncRNA upstream 67355 522119 ~ 523996 (-) True G30760
TU38518 lncRNA upstream 257948 712712 ~ 733413 (-) True G30784
TU38517 lncRNA upstream 273176 727940 ~ 733413 (-) False G30784
TU38533 lncRNA upstream 379694 834458 ~ 839109 (-) True G30797
TU38546 lncRNA upstream 432885 887649 ~ 894190 (-) True G30809
AMCG00018994 mRNA downstream 34862 416156 ~ 418266 (-) True AMCG00018994
AMCG00018993 mRNA downstream 41371 405369 ~ 411757 (-) True AMCG00018993
AMCG00018995 mRNA downstream 62314 382423 ~ 390814 (-) True AMCG00018995
AMCG00018996 mRNA downstream 71056 363203 ~ 382072 (-) True AMCG00018996
AMCG00018988 mRNA downstream 115495 323209 ~ 337633 (-) False AMCG00018988
AMCG00018991 mRNA upstream 18685 473449 ~ 477096 (-) True AMCG00018991
AMCG00019003 mRNA upstream 23263 478027 ~ 496837 (-) True AMCG00019003
AMCG00019001 mRNA upstream 60039 514803 ~ 518847 (-) True AMCG00019001
AMCG00019002 mRNA upstream 70991 525755 ~ 534393 (-) True AMCG00019002
AMCG00019006 mRNA upstream 140011 594775 ~ 609647 (-) True AMCG00019006
TU38468 other upstream 18807 473571 ~ 475232 (-) False AMCG00018991
TU38469 other upstream 20772 475536 ~ 477076 (-) False AMCG00018991
TU38444 other upstream 43968 498732 ~ 500189 (-) True G30729
TU38506 other upstream 164275 619039 ~ 622075 (-) False AMCG00019007
TU38514 other upstream 176928 631692 ~ 634293 (-) False AMCG00019007

Expression Profile