RNA id: AMCG00018997


Basic Information

Item Value
RNA id AMCG00018997
length 1263
RNA type mRNA
GC content 0.70
exon number 1
gene id AMCG00018997
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 559335 ~ 560597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCAGGCGGGCtctgtgcagctcctgtgccTGACGGCCAGCAGTGGAGTGCCCCTGTTCTGCCGCGGTGCGTCCCGCCAGCTGCCCTTCTCCGTGATCGGCTCCCTGAATGGCGTGCACATGTTTGGCGGGGGCCAGGGGGCCGCGCTGGCAAGCTGTGTGACGGAGCGCGGCGGCCGTGTGGCATGGCAGGTCTTCCAGGACAGTGTGACGCTCATCGCCGTGAGCGCCGAGGAGAGCAGCGACGCCTCCAGTGAGCTGCAGCTGCGCCGCCTGCTGGAAAACACTTGGAACTGCatggtgctgctgctggggctgGATGAGCTGGCCACCGTGAGGAACGTGGAGCGGCTGAAGAGGGACCTGCGCTCCTGCTACCAGCTCATCGATGCCTTCTTGGAGGGCCCGGCCGAGGGGCTTGGGGACCTGACGCATTGCGCTGACTGCCTGGCACCTACGCATCCCGACCTGCTGCAGGAGGCGCTGGACTCCTTCTCCCGTGCTGCTGACAGCGAGTTCGGCTGCCTGCTGGTTCACGGCAGCGTCGCGGCCGCCACGGAGAAGTGGTGGCGTCTGGCTCCGCAGGAGGTGGTGCTGCTGTCGGCCCTGGTGCGCACCCTGGGCGGTGCATCCTCCTGCGACCACCCCGTTTTCCTGCCCCAGGGAAGCCCCACCGTGCCCCACCGCCTACTCTGCTTCCAGCTGCTGCCTGGGGTGCAGGTGTGCGTGCTGTGCGGCCCCAGCCCCTCGCTGCAGAGAGCGGAGGGTGAGCTGGTGGTGCGCTTCTGGGCCCCCGTGGCGGAGGCCCTGCGGGGCTGCCTTGCCCTGCGGCAGCGTGGCCTGCCCGGCTCCGTGCCACTGCGGCGCGGCATCCTGGGGCTGCTGCTGGTGAACCGCGAGTCCCGCCGTGCACTCTCCTCCGTGCACCTGTGGCCCGACGCCCCTCCGGACGCCCCCTGCCCCCTGCGCCGCTGGCAGCTGCTGCGGCTCTTCTACGTGCTGGCTGCCACACGCTACTTCCCCCCCGAGGAGGTGCAGAGCGAGCGGCGGCACGGAGAGGTCCTGGATGAAGACTTCGCCGCCGGCTTCCCCCACCAGCCCCTGCAGTGCTACCTGGCCACAGACGAGTGCAAGTGCTTCGGCCTGCAGACCCCCCAGCACCAGCTCTACTTGCTGACCTCCGCCAGCCTGCCCACCTTCGCCCTGCGGCCCCTCGCCACCCACACCCTGGCCACCCTGCTCGGCCACGCCGGAGTTTGA

Function

GO: NA

KEGG:

id description
K22861 FUZ, CPLANE3; protein fuzzy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 62815 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 62815 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 62815 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 187537 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 303638 255326 ~ 255697 (+) True G30554
TU38383 lncRNA downstream 178629 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 448664 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 452414 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 577908 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 577908 1138505 ~ 1139858 (+) False G30723
AMCG00018999 mRNA upstream 3984 549516 ~ 555351 (+) True AMCG00018999
AMCG00019000 mRNA upstream 44904 506635 ~ 514431 (+) True AMCG00019000
AMCG00018998 mRNA upstream 55904 498649 ~ 503431 (+) True AMCG00018998
AMCG00018989 mRNA upstream 86077 460159 ~ 473258 (+) True AMCG00018989
AMCG00018990 mRNA upstream 144463 411483 ~ 414872 (+) True AMCG00018990
AMCG00019004 mRNA downstream 15360 575957 ~ 586263 (+) True AMCG00019004
AMCG00019005 mRNA downstream 37231 597828 ~ 599198 (+) True AMCG00019005
AMCG00019008 mRNA downstream 48178 608775 ~ 623347 (+) True AMCG00019008
AMCG00019009 mRNA downstream 140727 701324 ~ 702246 (+) True AMCG00019009
AMCG00019012 mRNA downstream 179876 740473 ~ 744083 (+) True AMCG00019012
TU38342 other upstream 2431 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 160663 395501 ~ 398672 (+) True G30589
TU38173 other upstream 485104 73792 ~ 74231 (+) True G30527
TU38402 other downstream 434730 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 672897 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 692769 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1301232 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1581233 2141830 ~ 2147563 (+) False G31110

Expression Profile