Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00018998 |
| length | 1138 |
| RNA type | mRNA |
| GC content | 0.66 |
| exon number | 3 |
| gene id | AMCG00018998 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030124.1 |
| NCBI id | CM030124.1 |
| chromosome length | 51038645 |
| location | 498649 ~ 503431 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
| GO:0004527 | exonuclease activity | molecular_function |
| id | description |
|---|---|
| K11600 | RRP41, EXOSC4, SKI6; exosome complex component RRP41 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU38301 | lncRNA | upstream | 2129 | 443168 ~ 496520 (+) | False | G30619 |
| TU38304 | lncRNA | upstream | 2129 | 492560 ~ 496520 (+) | True | G30619 |
| TU38302 | lncRNA | upstream | 2129 | 494320 ~ 496520 (+) | False | G30619 |
| TU38232 | lncRNA | upstream | 126851 | 370446 ~ 371798 (+) | True | G30583 |
| TU38196 | lncRNA | upstream | 216505 | 227976 ~ 282144 (+) | True | G30549 |
| TU38383 | lncRNA | downstream | 235795 | 739226 ~ 741433 (+) | False | AMCG00019012 |
| TU38404 | lncRNA | downstream | 505830 | 1009261 ~ 1026744 (+) | True | G30699 |
| TU38405 | lncRNA | downstream | 509580 | 1013011 ~ 1053885 (+) | True | G30700 |
| TU38435 | lncRNA | downstream | 635074 | 1138505 ~ 1139858 (+) | False | G30723 |
| TU38436 | lncRNA | downstream | 635074 | 1138505 ~ 1139858 (+) | False | G30723 |
| AMCG00018989 | mRNA | upstream | 25391 | 460159 ~ 473258 (+) | True | AMCG00018989 |
| AMCG00018990 | mRNA | upstream | 83777 | 411483 ~ 414872 (+) | True | AMCG00018990 |
| AMCG00018984 | mRNA | upstream | 239358 | 255473 ~ 259291 (+) | True | AMCG00018984 |
| AMCG00018983 | mRNA | upstream | 243202 | 246098 ~ 255447 (+) | True | AMCG00018983 |
| AMCG00018981 | mRNA | upstream | 252877 | 237250 ~ 245772 (+) | True | AMCG00018981 |
| AMCG00019000 | mRNA | downstream | 3204 | 506635 ~ 514431 (+) | True | AMCG00019000 |
| AMCG00018999 | mRNA | downstream | 46085 | 549516 ~ 555351 (+) | True | AMCG00018999 |
| AMCG00018997 | mRNA | downstream | 55904 | 559335 ~ 560597 (+) | True | AMCG00018997 |
| AMCG00019004 | mRNA | downstream | 72526 | 575957 ~ 586263 (+) | True | AMCG00019004 |
| AMCG00019005 | mRNA | downstream | 94397 | 597828 ~ 599198 (+) | True | AMCG00019005 |
| TU38241 | other | upstream | 99977 | 395501 ~ 398672 (+) | True | G30589 |
| TU38173 | other | upstream | 424418 | 73792 ~ 74231 (+) | True | G30527 |
| TU38342 | other | downstream | 51335 | 554766 ~ 556904 (+) | False | AMCG00018999 |
| TU38402 | other | downstream | 491896 | 995327 ~ 1001213 (+) | True | G30698 |
| TU38636 | other | downstream | 730063 | 1233494 ~ 1237637 (+) | True | AMCG00019030 |
| TU38640 | other | downstream | 749935 | 1253366 ~ 1253735 (+) | True | G30877 |
| TU38794 | other | downstream | 1358398 | 1861829 ~ 1871379 (+) | False | AMCG00019064 |
