RNA id: AMCG00018999


Basic Information

Item Value
RNA id AMCG00018999
length 2425
RNA type mRNA
GC content 0.65
exon number 11
gene id AMCG00018999
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 549516 ~ 556904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgAGTAAGTGAGTAACAGTCattctgtctccctctgtgtctctgcagggtCTTCAGCCCCCCGAGGACAGCCCAGAGATAGAGGGACTACTCGTACGCAGAGACAGATGGACGGACGCACTGCAGATGGACAGTGTGTGGATCTGGGGTGCTGACATGGGGAGACTGCGATCCCCACTCCCACCCTTCCCCCTCCCTAAGTGACACTACCTCTCCCTCACACTCCACCCGAGTCTCCACACTTGCCTGGTACACTTGCCCGGCTTGGACCtcccactccactccactccactccactgaGGAGGGCAGTGTGTCACGCTTCCCTGCGGCCACTGCCTGCTCTCTGTCCCCACTGCGCCGCCCTGCTGGATTACACGCTCACCCTGCTGTGATTACACGCTCACCCTGCTGTGGATATTTCCTCTGCCTGACAGCAGCCCCTGGGGGTCCAGCACAGACTGCTACTGAGGGTGGGAGCTTGACGGCTGCCCTGCTGGATATATAacctttaattaattttgaattattttaatacaattattttatctaACAACATTGCGCTGATTTCATTCTGCCCTCGTCGCTGGTCCCTGGTAGGCAGTAGAATGTGGCGCCCACTGCTGAGCGGGGGGATCGCGGGGGTGGAGTGAGAGGGGCAGGGTGGACACAGAACCGACGGGCGCGaaggagacggggagagagagggctAGCGATGGTGGAGCACGGGGAGCTGCTGGCCGAGATGGTGTCCGTGGGCAGGATGTCCACCACGGAGCGGCTCCGACATGCGCAGAAGCGCCGCGCGCAGCAGCTCAAGGGCTGGGCACAGATAGAGAAGGAGGGGCCCCGGGGCCCACGGACCGCCAAGGGGGCCAAGGGGGCCAAGGGGGGGCGCAGGGTTGTGTTCCCCGACAACGTCATGCTGCTGGAGGCCGCGGCACGCAACGACCCAGAGGAGGTGACGGAGCTCCTAAAAAGTGGTGTGAGTCCAGACCTGTTCAATGAAGATGGTCTGACAGCTCTGCACCAGtgctgtataGATGACTTTGAGGAGGTGGTGCGGGCCCTGCTGGCTGCGGGTGCGAGAGTGAACGCCTGTGACAGTGAGCTGTGGACACCGCTGCATGCCGCTGCCACCTGTGGACACACCAGCTTGGTGGAGCTGCTCGTCCAGCAtggtGCAGATCTGCTGGCGGTGAACGCAGACGGGAACATGCCCTATGACCTCTGTGAGGACGAGGTCACGCTGGAGTTCATTGAAACCGCCATGGCCGAGCAGGGCATCACTCAGGAGCGCATTGACGAGTGCCGCGGAGCGAAGGAGCAGGAGATGCTGTCGGACATCCGGGCTCTGATCCAGAGCGGTGCGGACCTCAATGCACAGGACGACAACGGAACCACGCTGctgcaCATCACGGCTGCGAACGGGTACCAGAGAGCAgcagagctgctgctggagaGCAGGGTGCGGCTGGAGGAGAGGGACAGCGATGGCTGGGCGCCGTTGCACGCCGCCTCCTGCTGGGGACAGATGCAGATGGTGGAGCTGCTGGTGGCCAATGGAGCCAGTCTGAATGCCAGGTCCCTGCTGGATGAGACACCgctggACGTGTGTGCGGATGATGAGGTCAGAGCCAAGCTGCTGGACCTGAAGCACAAACACGACGCCATCATGAAGAGCCAGGACAGACACAAGAGCAGCCTGCAGAGACGGGCCTCCAGCACGGGCAGCCgaggGAAGGTGGTGCGGCGGGTCAGTGTGAACGAGCGCTCCAGCCTGTACCGCCGGGAGCACCAGAAGGAGGCGATGGTGTGGCAGGAGCGCGGCCGGCAGCCCGAGCAGGATGACGACgaggacagacagacggacgcAGAGCTGCGCCAGCACACCGCCCCGgCTGCCGTGTCCGAGCCCGATGGGCCGGCTGTGGGGTCGGAGGTGAAGGGGGTCTCCGGCCTGGGCAACGGAGCCACGCCCCTCCCCCCCAGTGGAGCCCCGTCCGCGCTGGTGCCGGGGGAGGGCCGGGGTGGGGGGCGTCTGGACCGCAGCGCCTCGTACCAGCTGGCCACGGCGCAGGAGGAGCCGGCGGTGCCAGGTGCGGGCGAGGGCATGAGCCGGGAGAAGTCGCACCAGACGCTGGCCGACCTGAAGCGCCAGCGTGCCGCAGCCAAGCTCCACAAGCAGCCGGCGCCGCCCCCCCCCGCCCTGGCGCTGCCCCCTCCCGCCGCCGAGGAGCCCTCCCCGCCGAGCCCCGCCCACTCGGCCCCCCCGCCGGCTGGTCCCAGCGCCGTCTCGCTGCGGCCCAGCGCCAGCGGAGGCGCGTCTCAGCAGTGCCCTATGCggacggagagagagacggagtcCCCTGTGGCGGGCGATGGAGGGGGTTTGATGAAGGGTGTGTGTAGTGATGCGCTGCACTGA

Function

GO: NA

KEGG:

id description
K17458 PPP1R16A, MYPT3; protein phosphatase 1 regulatory subunit 16A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 52996 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 52996 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 52996 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 177718 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 293819 255326 ~ 255697 (+) True G30554
TU38383 lncRNA downstream 183875 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 453910 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 457660 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 583154 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 583154 1138505 ~ 1139858 (+) False G30723
AMCG00019000 mRNA upstream 35085 506635 ~ 514431 (+) True AMCG00019000
AMCG00018998 mRNA upstream 46085 498649 ~ 503431 (+) True AMCG00018998
AMCG00018989 mRNA upstream 76258 460159 ~ 473258 (+) True AMCG00018989
AMCG00018990 mRNA upstream 134644 411483 ~ 414872 (+) True AMCG00018990
AMCG00018984 mRNA upstream 290225 255473 ~ 259291 (+) True AMCG00018984
AMCG00018997 mRNA downstream 3984 559335 ~ 560597 (+) True AMCG00018997
AMCG00019004 mRNA downstream 20606 575957 ~ 586263 (+) True AMCG00019004
AMCG00019005 mRNA downstream 42477 597828 ~ 599198 (+) True AMCG00019005
AMCG00019008 mRNA downstream 53424 608775 ~ 623347 (+) True AMCG00019008
AMCG00019009 mRNA downstream 145973 701324 ~ 702246 (+) True AMCG00019009
TU38241 other upstream 150844 395501 ~ 398672 (+) True G30589
TU38173 other upstream 475285 73792 ~ 74231 (+) True G30527
TU38402 other downstream 439976 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 678143 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 698015 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1306478 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1586479 2141830 ~ 2147563 (+) False G31110

Expression Profile