RNA id: AMCG00019000


Basic Information

Item Value
RNA id AMCG00019000
length 2648
RNA type mRNA
GC content 0.65
exon number 14
gene id AMCG00019000
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 506635 ~ 514431 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGTGCAGGCGGCCGCTTCCGCCGGGCGCAGGAAGTCGCGCGCAGTAGCAGCGCGGAGCGGCGGCAGCTTCTTACGCACGTAAACAAGCGAGCGCTCGGCCTGCACTGCCGGGCCCACCAACCTGGACAGCCGAACCGGACCGGCCCGACTCACAGGTCGGGCTTTTCCCACAACACCCGCCCCCCTCCCGCCGGGATGGCGCTGAGCTCGGGCGGCTGGGCGCACACCCCGCCGCCCCGGACTCCCTCGCCCCCCCTGCCCGGGCCGGGAGCGCCTCAAGGCGGCTGCAGCACCGTGCTCATGTCGGTGAGAGTGTCGGTGTGCCACTCCGGCATCCGGCCTCTCTGCCTGCCCGGCGCCGGGGACGAGTCGCTCCGCCTGCAGCTCAGCATGGACCCGGGCCGGGCCGGGGAATTCCGCTTGGCTCTGCGGGACGCCAGCTCCTCGGCGGCCGCGGGCAGAAGCGTGTCCATCGTGGAGTTTGACTTGCGTGACGTGCGCTACGAGGTGAGGTCACAGCGCTGCCACGAGCTCAGCCTGGCCACCCCCCCGCACGACCGCATCACCTTCAACTTCCGGGACGAGCGCGAGGCGCAGGAGTGGGCCACTGTGATCACCTCCTCCCTGAGAGAGGCGCAGAGAGtTGCAGACGGCTGCTGTCAGCCCCCAGATGATAGGCAGCTCCAGCTGGAGCCCCTCGAACCCACAGCGTCTGCCATGCTGCCACGCACAGAGGAGCTGTGCACAGAGCTGGCACATGCGATCGAGGCCGGGGACGCCCAGGCAGCCTCTCGGTGCGCTCTGACTCTCGCTCGCCAGCAGGTGGTGCTCAGCATACAGCCCCGGCAGGACAGCTACCTGGACACCGAGATCAAtctgAAGGTGGCGGTGGAAGATGCCTCCTCGTCCTGTTGTGTCACAGTGAAAGTCTTCCCCCACATGACCATCGCCTCCCTGAAGCAGCAGgtGTTCCTGGACTACGGGTTTCACCCCCGAGTGCAGCGCTGGGTGATCGGGCAGTGCCTGTGCTCGGACCCGCGTTCGCTAGCCTCCTACGGGGTGCGGGGCCACGGAGACACGGCCTTCCTGTACCTGCTGTCCGCGCGCCAGGCCCGCCTGTCTCCCCAGCTGTGCCAGCGGGACCAGGAGAGCGCCCTACTGCAGGCCGGCCCCGTCCCCCCCAGCAACGGGCTGCCCCCACAGGACTGGCGAGGCTACAGCACCCTGCCTGCCCGGCTCCCCCACTCGACAGGCGGAGGGGGCGGGGCAGAGCGCCTCGGCGTCGGTGACATCCGAGACCTGATCAACCTGGAGATGCTGCAGCTGAATGAGGCACTGAGCCTTAACACAGCCAACCCAACGCCAGCCCACCTGCAGgCTGGCTGGTCTTGCCCGTCCTGTACCTTCATCAACAAGCCCACCCGGCCGGGCTGTGAGATTTGCAGTGCCGCCCGACCCCTGAGCTACACGGTCCAGGATGCAGAGAGGAAGCAGAACTTTGAGCGTCTGGTCCAGACGGACGAGCAGGACCTGGTACCGAACCGGGAGAGCGTGGAGTGTCGCATCTGCTACCTGGAGCTGCAGCCCGGGGAGGGGGTCCTGCTCCGGGACTGTCTGCACTGCTTCTGCAGAGAGTGCCTGCGCTCCGTGATCCATGTGTGTGAGGACCCCGAGGTGGCGTGTCCGTACCGCGACGACACCTACGCCTGCAACAGCACACTGCAGGAGAGGGAGATCCGCGCGCTGGTGTCCGTGTCAGAGTACGAGCGCTTCCTGTCCCGGGGGCTGGCAGTGGCCGAGTGCCGCAGTGAGAGCAGCTACCACTGCGCCACCCCGGACTGCCCCGGCTGGTGCGAGTACGAGGACAGCGTCAACACCTTCCACTGCCCCGTGTGCGCCCGGCACAACTGCCTGCTCTGCAAGGCAATCCATGAGGGGATGGACTGCAGGCAGTATCAGGATGACCTGGCTGTGCGCGCCCTCAATGACTCTGCAGCACGAAGGACCAGAGACCTGCTGAGAACTCTGGTCCAGACAGGGGAGGCGATGCACTGTCCACAGTGTGGAATAATTGTGCAGAAGAAGGagggctgtgattggctgcgCTGCACTGTCTGTCACACCGAGATCTGCTGGGTCACCCGGGGGCCACGCTGGGGGCCGGGGGGCCCGGGGGACACCAGTGGGGGGTGCCGCTGTAACGTCAACCAGCAGCGCTGCCACCCAGACTGCCAGAACTGCCACTAGCAGGAGAGGACAGCGGAGAGACGAGGCCATCGACCCTATAGTGCTTCCTGTAGTCTCTATGCAagctacacacacgcacacgcacacgcacagtgCATGACCTCAAGGGAACCTGCTAGCACAGACCAGCTCCACACAACCAGCTGTGTCTGCCACTAACACTGCGACTCACCACTGACtgacggacagagagagagagagagagcctttCACAGCCGGTGCCAGTCGAACCCTGTCCTGCTTATCGCAGCTGTGATtgatgaatacacacacacacacacacacacacacacacactctaacgCTGCTACGACGTGCACACGCTCAGGGCTGTGTTGTGTCTTTGCCATAGTGCCTTATTCTGTCCATTGTGTATCAATAAAGATGACTGATCAGCAG

Function

GO: NA

KEGG:

id description
K10630 RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 10115 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 10115 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 10115 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 134837 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 250938 255326 ~ 255697 (+) True G30554
TU38383 lncRNA downstream 224795 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 494830 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 498580 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 624074 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 624074 1138505 ~ 1139858 (+) False G30723
AMCG00018998 mRNA upstream 3204 498649 ~ 503431 (+) True AMCG00018998
AMCG00018989 mRNA upstream 33377 460159 ~ 473258 (+) True AMCG00018989
AMCG00018990 mRNA upstream 91763 411483 ~ 414872 (+) True AMCG00018990
AMCG00018984 mRNA upstream 247344 255473 ~ 259291 (+) True AMCG00018984
AMCG00018983 mRNA upstream 251188 246098 ~ 255447 (+) True AMCG00018983
AMCG00018999 mRNA downstream 35085 549516 ~ 555351 (+) True AMCG00018999
AMCG00018997 mRNA downstream 44904 559335 ~ 560597 (+) True AMCG00018997
AMCG00019004 mRNA downstream 61526 575957 ~ 586263 (+) True AMCG00019004
AMCG00019005 mRNA downstream 83397 597828 ~ 599198 (+) True AMCG00019005
AMCG00019008 mRNA downstream 94344 608775 ~ 623347 (+) True AMCG00019008
TU38241 other upstream 107963 395501 ~ 398672 (+) True G30589
TU38173 other upstream 432404 73792 ~ 74231 (+) True G30527
TU38342 other downstream 40335 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 480896 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 719063 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 738935 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1347398 1861829 ~ 1871379 (+) False AMCG00019064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068003 False 4393 mRNA 0.45 14 NC_007118.7 40058757 ~ 40082053 (-)
rainbow trout (Oncorhynchus mykiss) LOC110536553 True 5004 mRNA 0.45 9 NC_048575.1 14321792 ~ 14329490 (+)