RNA id: AMCG00019010


Basic Information

Item Value
RNA id AMCG00019010
length 1005
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00019010
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 669383 ~ 670387 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAAGATCATCGCCTATGAGCATCCTGACTTCAAAGGGATCAGCAAAGAGTTCACCTCTGACGTCTGCAACCTGAGGGATATCCACTTTGACAACTGCATCTCCTCCCTTAAGGTGATCGGGCAGCCCTGGGTCCTGTACAGAGACCCCAACTATCTAGGGAGACAGTGGGTCTTCGAGGAAGGAGAGTACGCCAGTGTGGAAGAGCATGACACCATCTCTTCCCTGCAGCTGGTGACTGAGGACCTGTCAAACCATCAGATCACTCTGTACCAGCACTCAAACTACCAGGGCAGAAGAATCGTCCTCACCTGTGAGACCAATCTGTGCCACGGCTCCTTCAATGACATGGCGTCCTCCCACAAAGTGCAGAGAGGAGCCTGGGTCCTGTACGAACATCCAGACAGAGGAGGGGTGCAGATGGTGGCTAGAGCTGGTCATGACAATCCTGATTATGGTTGGTACCATGATCGGCTGTCCCACCTGCGCCCTCTGAAGTCAGGGAGGTCAACGGTTACAGCAGAGGTCCTCTGGGACAAGAAGGAAGAGCAGATGAGGTCTGTAGCCATTGACTCCATGTGCGGCCTGAACCATGGTGACCTCAATCAGAGCTTCTCCACAGAGCTGAGCCGAGAGTACGAAAACTCAGTCACAGAGACCTTCAACTTCAGCAACTCTACTCAGATAACGGCGGGAACAAGTTTCTCTGTAAACGTGTTCGGGGTGAAAAACGAATTCGGCCTTTCTGTGAACAACACCTTCACTGTGGAAAAGGGAAAAAGCAACACCAGAACTGAGAGGAAGGGGGTCAAAATCAACCTGCCAGCCACAGTCCCTCCTCACACCAAGATCACTGTGAACGTGCTGAGGAAGGAGGTGGATGTGAAGGTGCCAGTCCAGCTGACTGTCACTCAGGGGGGGCACAGTAAGACAGAGTACGGGGAGTACAGGTGCCAGGCcgggctctctctctccactgagTACAgggaagagaagctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38488 lncRNA downstream 145387 522119 ~ 523996 (-) True G30760
TU38452 lncRNA downstream 214619 453128 ~ 454764 (-) False AMCG00018992
TU38291 lncRNA downstream 255101 413888 ~ 414282 (-) True G30612
TU38260 lncRNA downstream 337416 323618 ~ 331967 (-) True AMCG00018988
TU38247 lncRNA downstream 401456 266073 ~ 267927 (-) True G30594
TU38518 lncRNA upstream 42325 712712 ~ 733413 (-) True G30784
TU38517 lncRNA upstream 57553 727940 ~ 733413 (-) False G30784
TU38533 lncRNA upstream 164071 834458 ~ 839109 (-) True G30797
TU38546 lncRNA upstream 217262 887649 ~ 894190 (-) True G30809
TU38565 lncRNA upstream 380698 1051085 ~ 1053885 (-) True G30823
AMCG00019007 mRNA downstream 35517 614398 ~ 633866 (-) True AMCG00019007
AMCG00019006 mRNA downstream 59736 594775 ~ 609647 (-) True AMCG00019006
AMCG00019002 mRNA downstream 134990 525755 ~ 534393 (-) True AMCG00019002
AMCG00019001 mRNA downstream 150536 514803 ~ 518847 (-) True AMCG00019001
AMCG00019003 mRNA downstream 172546 478027 ~ 496837 (-) True AMCG00019003
AMCG00019015 mRNA upstream 42483 712870 ~ 723666 (-) True AMCG00019015
AMCG00019014 mRNA upstream 57678 728065 ~ 737692 (-) True AMCG00019014
AMCG00019018 mRNA upstream 314158 984545 ~ 992405 (-) True AMCG00019018
AMCG00019019 mRNA upstream 332206 1002593 ~ 1012013 (-) True AMCG00019019
AMCG00019025 mRNA upstream 424453 1094840 ~ 1095844 (-) True AMCG00019025
TU38514 other downstream 35090 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 47308 619039 ~ 622075 (-) False AMCG00019007
TU38444 other downstream 169194 498732 ~ 500189 (-) True G30729
TU38469 other downstream 192307 475536 ~ 477076 (-) False AMCG00018991
TU38468 other downstream 194151 473571 ~ 475232 (-) False AMCG00018991
TU38607 other upstream 504137 1174524 ~ 1174983 (-) True G30849
TU38606 other upstream 504149 1174536 ~ 1174983 (-) False G30849
TU38605 other upstream 504702 1175089 ~ 1177566 (-) False AMCG00019024
TU38658 other upstream 651227 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 651227 1321614 ~ 1323596 (-) True AMCG00019034

Expression Profile