RNA id: AMCG00019012


Basic Information

Item Value
RNA id AMCG00019012
length 315
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00019012
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 739226 ~ 744083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCATCGGGTGCACAAGTTCCCCGCTGAGGCCGTCAACATGAGAGCTCTGATCACAGCCCTGCTCTGCGCCGCCCTCACGCTCAGTGCGCTGGCAGGTAAGGACTGCGCTCGGGACGCTGGGATAGGCGTTAATCGCCTGGACAAAGCGAAGCTGAACGAACGCAGTGTGGTGCACTACGCCACCAGTGACTCTCCCCCAGACAGAACCGGCTTCCTCTATAACAAAGGAGAGCGTAACACGGCCTACCACTGGCGCTGGTTCATCCTGAAGGGTACATGCTGTTCTGCTTCAAGGACAAGGATAGCGTGA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 243953 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 243953 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 243953 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 368675 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 484776 255326 ~ 255697 (+) True G30554
TU38404 lncRNA downstream 265178 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 268928 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 394422 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 394422 1138505 ~ 1139858 (+) False G30723
TU38437 lncRNA downstream 394422 1138505 ~ 1139858 (+) False G30723
AMCG00019009 mRNA upstream 38227 701324 ~ 702246 (+) True AMCG00019009
AMCG00019008 mRNA upstream 117126 608775 ~ 623347 (+) True AMCG00019008
AMCG00019005 mRNA upstream 141275 597828 ~ 599198 (+) True AMCG00019005
AMCG00019004 mRNA upstream 154210 575957 ~ 586263 (+) True AMCG00019004
AMCG00018997 mRNA upstream 179876 559335 ~ 560597 (+) True AMCG00018997
AMCG00019011 mRNA downstream 71 744154 ~ 751040 (+) True AMCG00019011
AMCG00019013 mRNA downstream 36310 780393 ~ 780629 (+) True AMCG00019013
AMCG00019017 mRNA downstream 93916 837999 ~ 847327 (+) True AMCG00019017
AMCG00019016 mRNA downstream 116400 860483 ~ 861397 (+) True AMCG00019016
AMCG00019021 mRNA downstream 354146 1098229 ~ 1114219 (+) True AMCG00019021
TU38342 other upstream 183569 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 341801 395501 ~ 398672 (+) True G30589
TU38173 other upstream 666242 73792 ~ 74231 (+) True G30527
TU38402 other downstream 251244 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 489411 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 509283 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1117746 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1397747 2141830 ~ 2147563 (+) False G31110

Expression Profile