RNA id: AMCG00019013


Basic Information

Item Value
RNA id AMCG00019013
length 237
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00019013
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 780393 ~ 780629 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAGGGGATACGAGGAGAAGGCCAGAGAACAAGCGGAAAATTCTAGCGAGTTTGTGAAGAAAGTAGCCGTGGCACTGGCTGTGCTGATGAGTATGGGTGCAGGAGTGGGCATAGGGATGGCTGGAGCCGGGTTCTTCTTCGCCCCGGCAGCTGCACCGAGATTAGCAGCCACGACAATGGCGGCGGTCCAAGCCTTGCCAGCCCTGGCTGCTGCGAGCTGCTGTGTGCAGTGA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38383 lncRNA upstream 38960 739226 ~ 741433 (+) False AMCG00019012
TU38301 lncRNA upstream 283873 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 283873 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 283873 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 408595 370446 ~ 371798 (+) True G30583
TU38404 lncRNA downstream 228632 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 232382 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 357876 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 357876 1138505 ~ 1139858 (+) False G30723
TU38437 lncRNA downstream 357876 1138505 ~ 1139858 (+) False G30723
AMCG00019011 mRNA upstream 29353 744154 ~ 751040 (+) True AMCG00019011
AMCG00019012 mRNA upstream 36310 740473 ~ 744083 (+) True AMCG00019012
AMCG00019009 mRNA upstream 78147 701324 ~ 702246 (+) True AMCG00019009
AMCG00019008 mRNA upstream 157046 608775 ~ 623347 (+) True AMCG00019008
AMCG00019005 mRNA upstream 181195 597828 ~ 599198 (+) True AMCG00019005
AMCG00019017 mRNA downstream 57370 837999 ~ 847327 (+) True AMCG00019017
AMCG00019016 mRNA downstream 79854 860483 ~ 861397 (+) True AMCG00019016
AMCG00019021 mRNA downstream 317600 1098229 ~ 1114219 (+) True AMCG00019021
AMCG00019020 mRNA downstream 397491 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019029 mRNA downstream 417357 1197986 ~ 1198981 (+) True AMCG00019029
TU38342 other upstream 223489 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 381721 395501 ~ 398672 (+) True G30589
TU38173 other upstream 706162 73792 ~ 74231 (+) True G30527
TU38402 other downstream 214698 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 452865 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 472737 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1081200 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1361201 2141830 ~ 2147563 (+) False G31110

Expression Profile