RNA id: AMCG00019015


Basic Information

Item Value
RNA id AMCG00019015
length 459
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00019015
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 712870 ~ 723666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGTGTGCAATCAGCGAACTGCTGCTCTGAGGGAGGGGAGCCGGGGGTGCAGGCTGGCCTCTGTGACCGCTGTGCCACACTCGCAGAacacggacacggacacggacacggacaTTCAGGTGAGCACTTTCCCCTCGGTCTCCTTCTTCCTGACCGGCGGTGTGGATATTGCCAGGGAGTGTGGGTGTCCAGTGGGCTGGGCCGGTTTCAAAGACCATTGCTTTGAATATGTAGAGGAGAAGAAGGCCTGGATTGATGCAGAGGAGGGAGTGTGGCTGTGGAATGACGGTACACCGTTGGTCTACACCAACTGGAACCATGGGCAACCCGACGATGAGGCTGGACTGGCCCACTGTCTGGAAATgaacgtcggagaGGCCGAAGGCTGGAGTGACCACACCTGCCATGAAGCCATGCCATTTTTCTGCCGTACAGAGAGGCACCAGAGACACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38488 lncRNA downstream 188874 522119 ~ 523996 (-) True G30760
TU38452 lncRNA downstream 258106 453128 ~ 454764 (-) False AMCG00018992
TU38291 lncRNA downstream 298588 413888 ~ 414282 (-) True G30612
TU38260 lncRNA downstream 380903 323618 ~ 331967 (-) True AMCG00018988
TU38247 lncRNA downstream 444943 266073 ~ 267927 (-) True G30594
TU38517 lncRNA upstream 4274 727940 ~ 733413 (-) False G30784
TU38533 lncRNA upstream 110792 834458 ~ 839109 (-) True G30797
TU38546 lncRNA upstream 163983 887649 ~ 894190 (-) True G30809
TU38565 lncRNA upstream 327419 1051085 ~ 1053885 (-) True G30823
TU38634 lncRNA upstream 503164 1226830 ~ 1232565 (-) True G30871
AMCG00019010 mRNA downstream 42483 669383 ~ 670387 (-) True AMCG00019010
AMCG00019007 mRNA downstream 79004 614398 ~ 633866 (-) True AMCG00019007
AMCG00019006 mRNA downstream 103223 594775 ~ 609647 (-) True AMCG00019006
AMCG00019002 mRNA downstream 178477 525755 ~ 534393 (-) True AMCG00019002
AMCG00019001 mRNA downstream 194023 514803 ~ 518847 (-) True AMCG00019001
AMCG00019014 mRNA upstream 4399 728065 ~ 737692 (-) True AMCG00019014
AMCG00019018 mRNA upstream 260879 984545 ~ 992405 (-) True AMCG00019018
AMCG00019019 mRNA upstream 278927 1002593 ~ 1012013 (-) True AMCG00019019
AMCG00019025 mRNA upstream 371174 1094840 ~ 1095844 (-) True AMCG00019025
AMCG00019023 mRNA upstream 391918 1115584 ~ 1133886 (-) True AMCG00019023
TU38514 other downstream 78577 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 90795 619039 ~ 622075 (-) False AMCG00019007
TU38444 other downstream 212681 498732 ~ 500189 (-) True G30729
TU38469 other downstream 235794 475536 ~ 477076 (-) False AMCG00018991
TU38468 other downstream 237638 473571 ~ 475232 (-) False AMCG00018991
TU38607 other upstream 450858 1174524 ~ 1174983 (-) True G30849
TU38606 other upstream 450870 1174536 ~ 1174983 (-) False G30849
TU38605 other upstream 451423 1175089 ~ 1177566 (-) False AMCG00019024
TU38658 other upstream 597948 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 597948 1321614 ~ 1323596 (-) True AMCG00019034

Expression Profile