RNA id: AMCG00019019


Basic Information

Item Value
RNA id AMCG00019019
length 1527
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00019019
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1002593 ~ 1012013 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGCCTGCACTTCACCCTGCTGTGCTCGGCCACGCTGCTCATTGCCGCAGGGACACATTGGGATGAAGGAGGAGAGGCACCGAGCCCTGAGTCACGCTGTACTGACAGTCAGGATGATTCGTGCCCTGTTCCAGCGATTGGCAGCACCCCCTCAGACAGTGGCATACCCGAGCTTGTAGaggaaagacagaaaatagagtCTGTCGATAGTGAGCACAGTCCGGTGGCACCGGCGTTACAGAGCGCGGGCGTTTTCACAGTGGAAGGAGTCAGAGTTAATCCGACGTTTACACGTGATTGTTTTACCCCAAATCAAAAAAGGGCAGAAACAGGTCAACTAAAGACGGGTAACGAGCAGGGCGCCAAGACGGGTAATGAGCGGGGTGCCGAGACTGGTAACAAGCGGGGCGTCAAGACAGGTATCGAGCGGGGAAACCAGATGAGTAACGAACGGGGTGACAACATTACTATTGAAAGACCCCTAGGAAGAAAGGTTTCGCAAGAGCAAAGCATGCGTTTCAACGATGGGCGATTGATGAACTATGACCATCAGAACATCGTGGCCCTGCAGGACGACCCCGTGGTGAGGGAGTCGGCTGGTTTCCTCTACGAGAAGCATCCGTTTGAATCAACTCTTCTGGGTTTGCAGGGCGGGGAGCTGAGGGTAATCAAGGGCAACCGGACGCGTCTCACGAAAGACAGCCGCCTGGTCCTGGTCGGGCACGGCTCCAAGAGCGGTGACGGCATCGTCAGGCACAAGGGGCACGCGGCCGAGGAGATCGTGATCGTGGGCCGCATGGATATCCCAGACGGCAGAGTGAAGGCGCTCAGCCTGGTGGGCTGTGAGCTGGGGAAGGATGTCTCCTTTTCCACCACGCTGCTGCGGGCGCTGAGAGCCTACTGCATCGAGACCACACTGCACCTGCGCACCGTGGCGCTGTCCGTCAGCCGCTCCGGGGAGGTGATCACCAGGGAGGGTGCGGCCGGTGGATTTGTCTGGAAGCACAGGGACGCCAGTAAGAAAGTCATGGCAGAGCTGGACGGGCAGGGGCAGGTGGTGATGAGGACGCCGCAGCCAAGCCAGAGGGCGCAGGTGGTCTTAGACTACAAGGGCAGCGTTCTTCTGGATCCCGTTTGTCCAGAAAACCCACAGAAATTTGTCCCTGAAGAATATCGGCTCTACCGGGACAGACGCTCGTGGCGCTGGAGTGAGATCTCAGCCCTGCAGGTGACACTGCACGAGTCTCAGGATCAGCTCAAATTTAATCCAAACAAGCAAGAGGGGCCAAACGCTCCCCgagacactgtgtgtgtgtcgacCCGGCCCGTTCCCTTCTCCAGTGCAATGCAGGGGTGCAGCTCTGGAGTGGGGCTGTATTACACCCCAGGGACAACTGCACTCTACAGTGCAAGGCAAACAGTTTGGCCAGGGGGATTACAGCACACCGGGGGTCCTCAGATCTGGCCCCGAGGGGTCACACTGGTCCTGCCGATTTACGGGCAATCCAAGTCCTTCGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38546 lncRNA downstream 108403 887649 ~ 894190 (-) True G30809
TU38533 lncRNA downstream 163484 834458 ~ 839109 (-) True G30797
TU38518 lncRNA downstream 269180 712712 ~ 733413 (-) True G30784
TU38517 lncRNA downstream 269180 727940 ~ 733413 (-) False G30784
TU38488 lncRNA downstream 478597 522119 ~ 523996 (-) True G30760
TU38565 lncRNA upstream 39072 1051085 ~ 1053885 (-) True G30823
TU38634 lncRNA upstream 214817 1226830 ~ 1232565 (-) True G30871
TU38644 lncRNA upstream 244667 1256680 ~ 1256976 (-) False AMCG00019031
TU38669 lncRNA upstream 345295 1357308 ~ 1358163 (-) True G30900
TU38707 lncRNA upstream 493551 1505564 ~ 1505917 (-) True G30932
AMCG00019018 mRNA downstream 10188 984545 ~ 992405 (-) True AMCG00019018
AMCG00019014 mRNA downstream 264901 728065 ~ 737692 (-) True AMCG00019014
AMCG00019015 mRNA downstream 278927 712870 ~ 723666 (-) True AMCG00019015
AMCG00019010 mRNA downstream 332206 669383 ~ 670387 (-) True AMCG00019010
AMCG00019007 mRNA downstream 368727 614398 ~ 633866 (-) True AMCG00019007
AMCG00019025 mRNA upstream 82827 1094840 ~ 1095844 (-) True AMCG00019025
AMCG00019023 mRNA upstream 103571 1115584 ~ 1133886 (-) True AMCG00019023
AMCG00019026 mRNA upstream 126208 1138221 ~ 1158854 (-) True AMCG00019026
AMCG00019028 mRNA upstream 148791 1160804 ~ 1169115 (-) True AMCG00019028
AMCG00019027 mRNA upstream 157860 1169873 ~ 1171174 (-) True AMCG00019027
TU38514 other downstream 368300 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 380518 619039 ~ 622075 (-) False AMCG00019007
TU38444 other downstream 502404 498732 ~ 500189 (-) True G30729
TU38469 other downstream 525517 475536 ~ 477076 (-) False AMCG00018991
TU38468 other downstream 527361 473571 ~ 475232 (-) False AMCG00018991
TU38607 other upstream 162511 1174524 ~ 1174983 (-) True G30849
TU38606 other upstream 162523 1174536 ~ 1174983 (-) False G30849
TU38605 other upstream 163076 1175089 ~ 1177566 (-) False AMCG00019024
TU38658 other upstream 309601 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 309601 1321614 ~ 1323596 (-) True AMCG00019034

Expression Profile