RNA id: AMCG00019021


Basic Information

Item Value
RNA id AMCG00019021
length 3323
RNA type mRNA
GC content 0.63
exon number 17
gene id AMCG00019021
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1098229 ~ 1114219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCCTGCTCCGGGGGGGATGGGTTTGGCACATTTCAGGGGGTCAGAGGTGAGGCCAACGGGAAGACACTGATTGGAGGAGGGGGAATCAGAAGGGAGGGGATGGCAGGACCCCCAGCGGCACAGACCACCAGCGGGACAGACCGCCAGTGGGACAGACCACCAGCGGGACAGACCCCCAGCGGCACAGACCACCAGCGGGACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACCACCAGCGGCACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACTCCCAGCGGGACAGACCCCCAGTGGGACAGACCCCGGAGCACCCTGCCTCGCTGCGCGTTTACTGTCCCCGGGGACACAGTCCGCCTGTCGCCCCGGTGTGTCAGTGTCGCCCTGGCCCAGCCTCCGTCTGCCTCTCTGTCGCCCCGTACAGCTGTGGCCAAGCTGGGAGAACCAGGAAGCCGAGGCACAGTGCAGGAGTCTAGTGGACGAGGAGCTGCAGAAGAGCGAAGCGGGTCAGTGATCTGCTCTCGGCCGCAgccggacggacggacggacggacggacacGCAGAGGGACAGACAGCTCCTGCACAGCCCTGCCGCCGGACTGCGCTTACGTCACCAATAAGATAATACTCTCGGGCATACTGTACATAGAGGAGAGCCGCTACCTCAGGCTGTTCGAGACTGACCACCTGCCAGCCCACCTGCCCGTCTCACCCATGGGCACATGTGTTTCCTGTGACGTGGAGGTGAGCTGCCTGCACGCCCTGAAGGAGGCAGAGGCCGCCTTGCTGCAGGCGCTTGACACGGACGAGGCCCGGCTTCAGAGTGTCTTGCTCAGGGACGAGCTGGACGCCGCGCTGGCCATCACACTTGGCGCGCCCGTCTCCGTGGAGGTCGGAGAAGACTGGTGCCAGGGCGTGGTGCGGTACGTGGGCAGCATCACGCCCACTGGCTCCTCTATCATGCACAAGCTGCCCGGGGTGTTCTTCGGCGTGGAGCTGCAGgGTAAGGATGAGGGGAAGGGCCAGAATGACGGGAGTTTCGGAGCCACTCAGTTTTTCCGCTGTACCAAGAACTGCGGCATCTTCGCCCCCTTTACCAGGATCAGGCCCCCCCCGGCTCCGCCTGGTGACCTGCCCCTGCCAACCTCCCCCAGGGCCCCTCCCAGCCAGCTAGAGCCGCTGCAGCCCGGGGACAGGGTGCACTGGTTCCTGGAGGGCAACTCGGTTCAGCAGGGGGTGGTGAGGAGGCTGCAGAGGGTCGAGGAGCGCACCAggcatGACGCTGAGGTGCCGATGGACTGGGCAGGCGCAGTGGAGCCGGCAAGGGGCCAGGAGGTGAGCTTCACAGCGGAGGGGCTGCCCCTCAGCCTGAACGCCGTGGTGGAGGTGATGCTGTCGGAGGGACGCACGGTGTACGGGACGGTGCGCTGGATCGGAACCCTGCCCAACACCGAGGGGCTCAGAGAGGAGCCAGTGGGGGTCAGTGACGGGACGTTCAAGGGTCAGAGGCTGTTCCAATGTCCTACGCGCAGGGGGCTGTTTGTCAAGCTGCAGTCCTGCCGGCCTGACTCCCGCTTCCAAGCAaccgggggcggggggggcgcAGCCCCCGGGTCCCACACAGATTGGGATTGTGCAGTGCAAGGCAATGTCGCCCCCTTGTGGGCAGAGAAGGCAGTGCAGGTGCTGACGGGGACAATGAAGGGCATCCAGGGTCACTGCAACTCCTGCTACATGGACTCGGCTCTCTTCAGTCTGTTCTCGTGCTCCTCTGTGCTGGACTCTCTGCTGTTCAAAGCCACCCCTCAGAGAGACGCCCCCATCCAGACGACGCTGCTGCAGGAAATCGTCAACCCACTGCGCACCGTGGGGTTCGTGCCGGCCCGCAGTGTGATGAAGCTCCGCAAGCAGCTGAAGGAGGGAGGCCACTGCGCCAGCTTCACCACCGAGGAGAAAGaTCCTGAGGAATCTGTGGGTCAGAAGTTGCAGGAGGGGTACTGCTACCAGATCTTCCTGGACCAGAACCACAGCCTAGCGCTACCCACTGTGCGCCAGCTCCTGGAGCACTCTTTCCACAGTGCCCAGCTGCAGCTGGCAGAGGTGCCCTCCTGCCTGATCCTCCAGATGCCGCGGTTCGGGAAGAAGTTCAAACTGTTTGACAAGATTGTGCCGTCGCTGGAGCTGGACATCACAGACCTGCTGTGTGACGgccCACGGGACTGTGTGCTGTGCGGGACCCTGGCCACGGTCGAGTGCTCGGCCTGCTTTGGAGACGGCTCCTTCGGTGCCACAGGACTGAAGCAATTCTGTCAGCTGTGCAGCAAACAGGTCCACTCCCACCCCCAGCGACGAACTCACACCCCCTCTGTCCTGCGGCTGCCTGAGGGCTTCTCTCAGGGGAGGTCCCTGCGGCCGCCCCGGGACCTCTTGCAGCTGTTCGCAGTGCTGTGCATAGAGACCAGTCACTACGTATCCTTCGTCAGGCACGGTCCCGGCCCTGAAGACTGGGTGTTCTTCGACAGCATGGCCGATCGGCACGGTGATGAGGACGGGTACAACATCCCGGCTGTGCGTCCCTGCCCAGAGGTGGGCCGGTACCTGCAGATGCCACTGGGCCAGCTGGCGCTGCTGTCCCCGAGAGACATGGATGGCGTGGCCAAGAGGCTCTTCTGTGACGCCTACATGTACCTGTACGAGAGCCCCCGCATGGCCCTGTACCGCTGAGGAGCACCGccggggcaggggcaggggcggCCACAGAAATGGGGGCAGGGATAGACTGATGGACAGAGACAGTCTGGGACTGCGCCCACCTGTCCCGGCACTGACGCCCACTGCACCCTGGGGTGTTGGGAATCCCAATACCTGCTCACCTGCCCCGGATAAAGGTGCAACATAGATTGAGGGACTGAGACACAACACCAAACCCAAAATGGAGCACTCTCAAACAAAGCATGCTACCTCCGGCATGTGCGGTCGGCCCTGGGATTCGGACCGCCTTAGACAAACCCGCCGGCCTGCACTGCGTGACGCTGAAGACTGGCCCTGGACGAGACGCACGCTTTAGACAGCGGTACTTATAACCCACTGTGGGAAAGACACTGAGGCACTTTTCAGCCAGAGTTCAAGTGTGAAGTGTGAGCCTGTATTAAGAAgcaatcatatatttatataaccaAAAAGAATCTTTGCTGGGTGTGTCCATGTGTATCAATTAGTGCCTTGAGGGGGGGAAGCAGTTTTttaaaagtaagtaaataaatgactaaaCTTGC

Function

GO: NA

KEGG:

id description
K08601 CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLD

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38405 lncRNA upstream 44344 1013011 ~ 1053885 (+) True G30700
TU38404 lncRNA upstream 71485 1009261 ~ 1026744 (+) True G30699
TU38383 lncRNA upstream 356796 739226 ~ 741433 (+) False AMCG00019012
TU38301 lncRNA upstream 601709 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 601709 492560 ~ 496520 (+) True G30619
TU38435 lncRNA downstream 24286 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 24286 1138505 ~ 1139858 (+) False G30723
TU38437 lncRNA downstream 24286 1138505 ~ 1139858 (+) False G30723
TU38438 lncRNA downstream 24286 1138505 ~ 1139858 (+) True G30723
TU38615 lncRNA downstream 72178 1186397 ~ 1187225 (+) True G30857
AMCG00019016 mRNA upstream 236832 860483 ~ 861397 (+) True AMCG00019016
AMCG00019017 mRNA upstream 250902 837999 ~ 847327 (+) True AMCG00019017
AMCG00019013 mRNA upstream 317600 780393 ~ 780629 (+) True AMCG00019013
AMCG00019011 mRNA upstream 347189 744154 ~ 751040 (+) True AMCG00019011
AMCG00019012 mRNA upstream 354146 740473 ~ 744083 (+) True AMCG00019012
AMCG00019020 mRNA downstream 63901 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019029 mRNA downstream 83767 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019030 mRNA downstream 99457 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019033 mRNA downstream 204561 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019040 mRNA downstream 300391 1414610 ~ 1428982 (+) True AMCG00019040
TU38402 other upstream 97016 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 541325 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 699557 395501 ~ 398672 (+) True G30589
TU38173 other upstream 1023998 73792 ~ 74231 (+) True G30527
TU38636 other downstream 119275 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 139147 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 747610 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1027611 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 1029702 2143921 ~ 2147563 (+) True G31110

Expression Profile