RNA id: AMCG00019025


Basic Information

Item Value
RNA id AMCG00019025
length 783
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00019025
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1094840 ~ 1095844 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAAGATCATCGTCTATGAGCATCCTGACTTCCAGGGGGTCAGCAGAGAGTTCACCTCTGACGTCCCCAACCTGAGGGACGTCCACTTTGACGACTGCATCTCCTCCCTGAAGGTGACTGGGCAGCCCTGGGTGCTGCACAGGGACCCCGACCATCAAGGGCGGCAGTGGGTCTTTGAGGAAGGAGACTACGCCAGTGTGGAAGAGCATGACACCATCTCTTCCCTGCAGCTGGTGACCGAGGACCTGTCAGACCCTCAGATCATGCTGTATGAGCACTCAAACTACCAGGGCAGAAGCATTGTCCTCACCTGCGAGACCAACCTGTGCCACGGCTCCTTCAATGACATAGCGTCCTCCCACAGAGTACAGAGAGGAGCCTGGGTCCTGTATGAACATCCAGACAGAGGAGGGGTGCAGATGGTGGCCAGAGCTGGTCATGACGTGCCTGATTATGGTTGGTTCCATGACCGGCTCTCCCACCTGCGCCCTCTGAAGCCGGGGAAGCCAACAGTGACAGCGGAGATCCTGTGGGACAAGAAGGAGGAGCAGGGAGTAAGCATCACCAAGACCGAGAGGAAGAAGGTCCAGGTCAGCATGCCAACCAAAGTCCCTCCTCACACCAAGCTCACTGTGAAGGTGGTGAGGGAGGAGGTGGATGTGAAGGTGCCAGTCCAGCTGACTGTCACTCAGGGGGGGCACAGTAAGACAGAGTACGGGGAGTACAGGTGCCAGGCcgggctctctctctccactgagTACAgggaagagaagctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38565 lncRNA downstream 40955 1051085 ~ 1053885 (-) True G30823
TU38546 lncRNA downstream 200650 887649 ~ 894190 (-) True G30809
TU38533 lncRNA downstream 255731 834458 ~ 839109 (-) True G30797
TU38518 lncRNA downstream 361427 712712 ~ 733413 (-) True G30784
TU38517 lncRNA downstream 361427 727940 ~ 733413 (-) False G30784
TU38634 lncRNA upstream 130986 1226830 ~ 1232565 (-) True G30871
TU38644 lncRNA upstream 160836 1256680 ~ 1256976 (-) False AMCG00019031
TU38669 lncRNA upstream 261464 1357308 ~ 1358163 (-) True G30900
TU38707 lncRNA upstream 409720 1505564 ~ 1505917 (-) True G30932
TU38839 lncRNA upstream 493735 1589579 ~ 1590721 (-) True G31018
AMCG00019019 mRNA downstream 82827 1002593 ~ 1012013 (-) True AMCG00019019
AMCG00019018 mRNA downstream 102435 984545 ~ 992405 (-) True AMCG00019018
AMCG00019014 mRNA downstream 357148 728065 ~ 737692 (-) True AMCG00019014
AMCG00019015 mRNA downstream 371174 712870 ~ 723666 (-) True AMCG00019015
AMCG00019010 mRNA downstream 424453 669383 ~ 670387 (-) True AMCG00019010
AMCG00019023 mRNA upstream 19740 1115584 ~ 1133886 (-) True AMCG00019023
AMCG00019026 mRNA upstream 42377 1138221 ~ 1158854 (-) True AMCG00019026
AMCG00019028 mRNA upstream 64960 1160804 ~ 1169115 (-) True AMCG00019028
AMCG00019027 mRNA upstream 74029 1169873 ~ 1171174 (-) True AMCG00019027
AMCG00019024 mRNA upstream 79187 1175031 ~ 1177363 (-) True AMCG00019024
TU38514 other downstream 460547 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 472765 619039 ~ 622075 (-) False AMCG00019007
TU38444 other downstream 594651 498732 ~ 500189 (-) True G30729
TU38469 other downstream 617764 475536 ~ 477076 (-) False AMCG00018991
TU38468 other downstream 619608 473571 ~ 475232 (-) False AMCG00018991
TU38607 other upstream 78680 1174524 ~ 1174983 (-) True G30849
TU38606 other upstream 78692 1174536 ~ 1174983 (-) False G30849
TU38605 other upstream 79245 1175089 ~ 1177566 (-) False AMCG00019024
TU38658 other upstream 225770 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 225770 1321614 ~ 1323596 (-) True AMCG00019034

Expression Profile