RNA id: TU38636


Basic Information

Item Value
RNA id TU38636
length 4144
RNA type TUCP
GC content 0.46
exon number 1
gene id AMCG00019030
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1213676 ~ 1237637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttcaataatttattttaacaatgtccAGCCTGTCCCTACACCTCTCTCAGCGCCCCCCTGCACGCTGCACTTCAACACAGGGCCCGCCGCTGGGGGGGAGAGGACAGAGTCATTGCAGTTGCCCCCCCGCatcattaacaataataatagtaatcatggTAATAATAGGCGTAACAATATGGACATCGACTGTCAGAACAGGAGttctaacaaattaaattaatcaaataaaaaaaaaattgaaatcacaaacagaaaatacctttaaaattgttatttttaaccaAAGGTAGCTCTCATGTAGTATTTAAAagtctcttattttttcttctttgagatcaattttttaattgtttttaaagagtgGACTACTCTTAGAGAAGTGTCGTGGCCTGCCTCCTGTGCCTGCCCTCCTGGTTGCCCACGATTGGTTAACTGGCTGACCAATAACGTGTGATTGGATGGCTGATAACCTGGGCACGAGCGGTAGAAAAATTCAGAATCTGTCACCTTGGCATCTGTCGAGGCAACCTCCCCGTGTAAACAGTCCTCCCCTCCTCCTGTGGGTCCTTGGTTCCTCGCTGAGCCGAGAGCTGGGAGTTGCACAGACCAGTCTTtgggtttttccttttaacGTGTGTATGTTTGGCGTGTGTACGGTCACACCCTCGCTCTGGGAAGAGTCCGGGGGAGTGACGTCACTGTGACAGGCTTGATTACACAGTGAGCCCTGCCATGCATGGGGGTGCGGGGGACCCTAATACTGCCTTTGTCCTACCTCTCCAGTGTTTGTACCCCACTTTCCGAAAGTCTGTGTCCTGTCCACCTGTGACCCCTAGTGCAGTACCAGACTGCTCCCACAGACGTCTCACACAGAACCCTGCTCCTACCTGCACATGTAACAAcaagattaaaacataaaatatatcacCCCGTGTTCCTTTAGGACTGAgtactatctctctctctctctcccgctccctcttctctctctctgtctcagtcagCGGCCGGTAccccaggaaaacaaaaacaaaacagacaatcaAATTAAGATGAAACACCCTGCTTGCATTTGACGGTCCCTTTGCTTTttatcttcattattattttttaatatttaatcatgtttaatatattgtaggtctgtatgtgtataaatatatgtattgatttattttacagctaCTCCGTACAGGCTGTGGTGTTTTCACAGGGGACCtgcttgaattatttattattttatggggATGAGGTATGGTGGCGAGACCACAGGGACAGATGGGAGACaggagagacggacagagagacaggagagacagaCGTGATAAAGTGATAGTACACCTTCACTCACTTTCATTTGCTCCCTCCCGTCCCTAGTCTCTCACACCCACCCTGTTACCCTCTATCACTAAATCCCTTCCTCTGTGATTAGAAGTTtaggatttaatttaaagcaaataaaacaatgaaaaaacaacatttttttcaaaaattaaaAGACACACGCAGAGCACCATTCAAAGCGTGTGTGTTTGACTGTCCTCTGTCTAGTCTTGTGTGCAGTCTTGGACATCTGGTGTATGGAGTATACCTTATGTGTGTATCTGAGTGTCTGACCGTGAGTATCGATCATGCCtatctgtgtgtccctgtgtgtgagtgtgagtgtgtgtgtgtgcgtgtgtgtgtgtgcgtggctGGCTCCGCAGTGCTCAGAGGGCAGTGAGGAAGCACCAGAGAGACGTGTTTCTCTGAGCACCCACGGTGCACTGCGGTTAGATGCCATGTCAGCGTggctctggctgtgtgtgtcgACCCTGTGAATGTATAGAGACTCAGCAAGACAAGCAGAGCTGGGGAGCAGTGTGGGGGTGGGATGGGTGTGGGGGAAAGAGTTTGGAGATGGGGGTATAAGGGGAGGGTAGGGGGTTGTGGGTTCGAGTGTCTAATGCAGACTACTGTAGCATCCTTGAGCAAGGCTCTGTCTGTACTGAAgtttactgcactgtgctgtacgaACTGAAGTACACTGTAAACTATTACAAAAGCCTGAAACTGCTCAgtgtcacacaacacactgaaagGCATTTATGAAAGccatcttaaataaaaataataatcctataataaatagatcaataaattatacaaaacaatggATACAAAAGTTGTATAAAAACCCTATAAAATTGGAGCAGACAACAAACATCATTccccaaaataataaaaaaataaacaggcttttgaggtggggggggcaggagcacacactcacaccgatgtgtacacacacacagggacacacagacatacacacaccctTATTGATAGAttgcacaggcacacacacacacacactgatgtaTAGAGGGAGATATGCacataacaaacacacagcaaggTGTACAGAGAGACATgtacacactaacacacactagCACAAGGAAAAGTGTAGATAGACACGCACAACAGGCACTGACTGAAGACAGACAGAATCAGAGAGGCTTGGAGAGGCGGATGGCACTGTGAAGTTGCACAGTTTCTTTTCCCCTAGAGAGGAGAAGAACGGACGTCCTGGGGAGAAGACGGGCAAAGTGCCGTTCAGGGAGTCGGCCTCGCGGGACCCTGGTCTCCTGGGGCGACACGAGGAGGAAGACGAATCGGTTTTCCTCCCCcctgaataataaatacagacaaatctttaaattaaataataaaaatgtgtccaCCTAACCTAGAGGAGATACACTTTATGGCAGTGGGACAGCAGGGTTTGTGTGCCCAGACCTGGTCCTGGGAGCCGCAGTGCAGCAGGTATTGCCAGCGCCATCCTCAAATGATCAGTGTATaaagcagacacacagacatttacTTCTGGTCAGTTAGACATGAGATCAATTTGGGTATTTTATTGTAGCGCATGCGTTCAGACCTCCCCACCCCTCACTCTGAATTGTACCGCCCCCTCAGACACCCCCAGCGCCTGTCTGACCCGAGCTGCCTCCCTGGCAGAGCAACACGCCAGCCACGGCCTGACTCCAGTTTAgacattattattgtataaaataaagttaaaagcGGTGAAGCGATGTCTGGGTCAGGTGGTGAATGTCGATGTTGTCGAGAGCAGAAACGTTACAGACACGGGCCGGTATTGAAGTGGGCAGACTGAGCCTGACTAACGAGCAGCACAGAGCTGCTGACGTACTGAACACACCGGCCTGTTCAGATTAATTTCGGTTTTCATCCTTCTGGTTTTGCTCCATTTTTCGCTTGTTATTGTCCGTCGCGTTCGGATGACCTCAGTGCCTAGTGtggacccccaccccccacccccctctgaACAGAGCGCTCAGAGAGCAGTGGATGGGCTGAGCagagcagggctgtgtgtgtactTCATATATACAGGGCGGTTTTCTACTCATCGAACCATTTCAGTCactcatacaaaaaaaaaaacagtgcccCTGCCTGtccagcagccccagccccCAGGGGCCACAGTCCCTGACGCCACACCTGTGGGCTGGTCCTCCTCTCTGGATGAGGCGTCGCAGTCAAATAATACAACTCCACAGAGCAGCTGGCGTGATGTTCGTGTGGAGACTGAACATACCTCTCGCTTCTATTGCCTCTTTCAGTTCATCAGCTGTGTGCATCAGCTCTCAACATGTCTTCTGTAATTTCAGGTCAAGAGACTACAGGGGTTGGAAAGATGCAAAATGAAGTGGTTTGATGGCTAGAGAAACACCCTGCAGtggtatatgtatttaaatataaatataaacatatgtatatataaagtatgtACTTACACATACAGACACTATGTGACCAAAAGGAGAGGGACACATCTGTCCCCTGATGAAGGCTTGTGCCAGCAGAGGCCCTGTGTTGAGGTTGTGTCTTTGTGAGGGGGCACCAGTGACCACCCCGGTGCATGCTGGGATATTGTAGACACTACACTCTTAGAAAAGGAGGTTAATCTGTTATATTTGAGTTTGTTTCACAATTCTTAATAACGAAAATGCTCAATACATCAGACAACTCTACAAGAAACTAAACAGtattcaaaagtaaaatatataccatgattaaaacaaaacaaaatgaaatggagTAATGCCGGTAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38631 lncRNA upstream 5053 1226829 ~ 1228441 (+) True G30869
TU38629 lncRNA upstream 34399 1198590 ~ 1199095 (+) False AMCG00019029
TU38628 lncRNA upstream 37292 1195932 ~ 1196202 (+) True G30866
TU38615 lncRNA upstream 46269 1186397 ~ 1187225 (+) True G30857
TU38435 lncRNA upstream 93636 1138505 ~ 1139858 (+) False G30723
TU38637 lncRNA downstream 239 1237876 ~ 1238710 (+) True G30874
TU38641 lncRNA downstream 18803 1256440 ~ 1256647 (+) True G30878
TU38650 lncRNA downstream 72469 1310106 ~ 1310381 (+) True G30887
TU38651 lncRNA downstream 80985 1318622 ~ 1319017 (+) True AMCG00019033
TU38675 lncRNA downstream 171834 1409471 ~ 1409958 (+) True G30903
AMCG00019029 mRNA upstream 34513 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019020 mRNA upstream 49590 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019021 mRNA upstream 119275 1098229 ~ 1114219 (+) True AMCG00019021
AMCG00019016 mRNA upstream 372097 860483 ~ 861397 (+) True AMCG00019016
AMCG00019017 mRNA upstream 386167 837999 ~ 847327 (+) True AMCG00019017
AMCG00019033 mRNA downstream 81143 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019040 mRNA downstream 176973 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019041 mRNA downstream 316436 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019042 mRNA downstream 325386 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019046 mRNA downstream 348188 1585825 ~ 1605545 (+) False AMCG00019046
TU38402 other upstream 232281 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 676590 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 834822 395501 ~ 398672 (+) True G30589
TU38173 other upstream 1159263 73792 ~ 74231 (+) True G30527
TU38640 other downstream 15729 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 624192 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 904193 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 906284 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1856841 3094478 ~ 3096426 (+) False AMCG00019096

Expression Profile