RNA id: TU38644


Basic Information

Item Value
RNA id TU38644
length 297
lncRNA type sense_over
GC content 0.72
exon number 1
gene id AMCG00019031
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1239711 ~ 1260637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTGGTCCAGCAGCAGCCAGCACGACTCGCTGGCCTCCTCCTCAGCTGGCTACTCCCCCGGGGGCAACCGCAAGCGCAAGACCCGCAAGCCCTCGTTGCCCCAGGAGGTGCTGGCTCACTGCGGGGAGGTGGGCCCAGGGGCCGAGGGCGAGGTAGGCGGGCGGGGACCAGACTCGCCCCGCTCAGGATTCCCGGAGAGCTTCCTGGCGCAGGCGCGGCTGGCATGGGAGGCCCAGCAGGTGCACCAGCTCAAGCACCGGAGCAGCTGGGACGCCGCCCAGCAGCAGGGAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38634 lncRNA downstream 24115 1226830 ~ 1232565 (-) True G30871
TU38565 lncRNA downstream 202795 1051085 ~ 1053885 (-) True G30823
TU38546 lncRNA downstream 362490 887649 ~ 894190 (-) True G30809
TU38533 lncRNA downstream 417571 834458 ~ 839109 (-) True G30797
TU38518 lncRNA downstream 523267 712712 ~ 733413 (-) True G30784
TU38669 lncRNA upstream 100332 1357308 ~ 1358163 (-) True G30900
TU38707 lncRNA upstream 248588 1505564 ~ 1505917 (-) True G30932
TU38839 lncRNA upstream 332603 1589579 ~ 1590721 (-) True G31018
TU38860 lncRNA upstream 448923 1705899 ~ 1708750 (-) True G31035
TU38864 lncRNA upstream 475609 1732585 ~ 1733587 (-) True G31038
AMCG00019032 mRNA downstream 63153 1191233 ~ 1193527 (-) True AMCG00019032
AMCG00019022 mRNA downstream 67205 1185228 ~ 1189475 (-) True AMCG00019022
AMCG00019024 mRNA downstream 79317 1175031 ~ 1177363 (-) True AMCG00019024
AMCG00019027 mRNA downstream 85506 1169873 ~ 1171174 (-) True AMCG00019027
AMCG00019028 mRNA downstream 87565 1160804 ~ 1169115 (-) True AMCG00019028
AMCG00019036 mRNA upstream 58100 1315076 ~ 1315516 (-) True AMCG00019036
AMCG00019034 mRNA upstream 64735 1321711 ~ 1323160 (-) False AMCG00019034
AMCG00019035 mRNA upstream 67887 1324863 ~ 1344760 (-) True AMCG00019035
AMCG00019037 mRNA upstream 102845 1359821 ~ 1362959 (-) True AMCG00019037
AMCG00019038 mRNA upstream 170241 1427217 ~ 1432739 (-) True AMCG00019038
TU38605 other downstream 79114 1175089 ~ 1177566 (-) False AMCG00019024
TU38607 other downstream 81697 1174524 ~ 1174983 (-) True G30849
TU38606 other downstream 81697 1174536 ~ 1174983 (-) False G30849
TU38514 other downstream 622387 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 634605 619039 ~ 622075 (-) False AMCG00019007
TU38658 other upstream 64638 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 64638 1321614 ~ 1323596 (-) True AMCG00019034
TU38861 other upstream 448923 1705899 ~ 1710543 (-) False G31035
TU38924 other upstream 698692 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 781671 2038647 ~ 2083271 (-) False G31082

Expression Profile