RNA id: TU38651


Basic Information

Item Value
RNA id TU38651
length 375
lncRNA type sense_over
GC content 0.52
exon number 2
gene id AMCG00019033
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1318622 ~ 1321493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACCTTCCCAGCTCAAGCGGTTCAGTGCAAAGTGGGAGAAGATcgcatttgtctttttaaattattattattattattattattattattttatttttttaacgcAGAAGGGTTTTTTGGATATAAGTCTGTGCAATGCTGATGCGCTGGTCTGTCGCCAGGAGCAGCCGGGCTCTGCTGGGAGCCGAGCGGCCAGGGCGTCGCTGTGCCCGGGGCAGCGGCACCTACACGCAGGGGCAGAGCCCGGAGCCGCGCATCCGCGAGTATTTCTACTACATAGACCACCAGGGCCaggtgacacacacactgtgcagcGCCGCACagtatacaacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38650 lncRNA upstream 8241 1310106 ~ 1310381 (+) True G30887
TU38641 lncRNA upstream 61975 1256440 ~ 1256647 (+) True G30878
TU38637 lncRNA upstream 79912 1237876 ~ 1238710 (+) True G30874
TU38631 lncRNA upstream 90181 1226829 ~ 1228441 (+) True G30869
TU38629 lncRNA upstream 119527 1198590 ~ 1199095 (+) False AMCG00019029
TU38675 lncRNA downstream 90454 1409471 ~ 1409958 (+) True G30903
TU38684 lncRNA downstream 96934 1415951 ~ 1416163 (+) True G30910
TU38713 lncRNA downstream 233627 1552644 ~ 1552862 (+) True G30937
TU38715 lncRNA downstream 262254 1581271 ~ 1581489 (+) True G30939
TU38719 lncRNA downstream 278781 1597798 ~ 1599229 (+) True AMCG00019046
AMCG00019030 mRNA upstream 82441 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019029 mRNA upstream 119641 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019020 mRNA upstream 134718 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019021 mRNA upstream 204403 1098229 ~ 1114219 (+) True AMCG00019021
AMCG00019016 mRNA upstream 457225 860483 ~ 861397 (+) True AMCG00019016
AMCG00019040 mRNA downstream 95593 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019041 mRNA downstream 235056 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019042 mRNA downstream 244006 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019046 mRNA downstream 266808 1585825 ~ 1605545 (+) False AMCG00019046
AMCG00019050 mRNA downstream 309808 1628825 ~ 1641050 (+) True AMCG00019050
TU38640 other upstream 64887 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 80985 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 317409 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 761718 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 919950 395501 ~ 398672 (+) True G30589
TU38794 other downstream 542812 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 822813 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 824904 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1775461 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1884770 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile