RNA id: TU38658


Basic Information

Item Value
RNA id TU38658
length 1056
RNA type TUCP
GC content 0.58
exon number 2
gene id AMCG00019034
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1321614 ~ 1323596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGCCTGCTGTGTAGCGACACTGTCTGCACAGTGCTGGCTTGTATTCTGTATCATTACCAGCAGAGAAATAAGAAGCCACGATATTGAGTAATGCCGTCCTCCCAACCCACAGctacattgtttaaattgaatcaaaatattaataaagtagAAAAACTGGTAAACATTATAAATGGAGCATCGACTCCAAAACTGGATGACTCTAATAAAAAgctgttgttattttgtaaaacGTTCATGACACTGGAATTGCGGTCATTGGTGTGTGTGGACGTGTCTTGCCTGTGCAGGTACAGGCAGTGacacctgtgtgtgtcagggacGGTGGGCTCCTGGTGTCCCTGTGTGTTAATGCGGTTGCACGTGTCCTCTCTGTCCTCAGCTGTTCCTGGACGACACCAGAGTGAAGAACTTCGTCACCTGTTTCAAAGACCGGCACTTCCTGGTGTTCTTCTTCAGCCGCCTGCGCCAGAACGAGAGCGGCCGCTACCAGGACTCCTTCCCCTTCCTGTCACTGTGCGGCCGCGAGCGCAACTTCCTGCGCTGCGACGACCGGCCAGTGGTCTTCACTCAGCTGCTGGGGTTCAACGCGGCggacggggacggggacggggaaggggaaggaggaggaggtgcgGCAGAGATGCacggaggaagagagggagagagagccaGTGAGGGCCTGGAGCTCCTCTCCTTCTGTGGCGGGGGCAGGGAGCTGGCCGTGCCCTTCCGCCCCCAGGCCCTGTACATGCACCCGGACTCTGGGCGGCTGTACCACCCGTGTGCCGGGCGGGCGGGGGCAGTGGGGCTGGTGCGCTCTGCTCTGGCCTTCCAGCTCAGCTCCCGGTTTGAGTACCCCTCCGGCCAGACCCTGACCACCCAGCCCACACACTTCCACTGGGCGGGGGAGCGGCATGTGCTGACCAATGAGCTGGCTGCACACTTCACTTAGCACCCGGgggctgtgtgtggggggctgtGCTGCGATAGAGGGGCCACAGGCACACTGGAGACTGGGGAGGGGCGAGAGACAACTCCTGCACTTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38644 lncRNA downstream 64638 1256680 ~ 1256976 (-) False AMCG00019031
TU38634 lncRNA downstream 89049 1226830 ~ 1232565 (-) True G30871
TU38565 lncRNA downstream 267729 1051085 ~ 1053885 (-) True G30823
TU38546 lncRNA downstream 427424 887649 ~ 894190 (-) True G30809
TU38533 lncRNA downstream 482505 834458 ~ 839109 (-) True G30797
TU38669 lncRNA upstream 34275 1357308 ~ 1358163 (-) True G30900
TU38707 lncRNA upstream 182531 1505564 ~ 1505917 (-) True G30932
TU38839 lncRNA upstream 266546 1589579 ~ 1590721 (-) True G31018
TU38860 lncRNA upstream 382866 1705899 ~ 1708750 (-) True G31035
TU38864 lncRNA upstream 409552 1732585 ~ 1733587 (-) True G31038
AMCG00019036 mRNA downstream 6098 1315076 ~ 1315516 (-) True AMCG00019036
AMCG00019031 mRNA downstream 60977 1239711 ~ 1260637 (-) True AMCG00019031
AMCG00019032 mRNA downstream 128087 1191233 ~ 1193527 (-) True AMCG00019032
AMCG00019022 mRNA downstream 132139 1185228 ~ 1189475 (-) True AMCG00019022
AMCG00019024 mRNA downstream 144251 1175031 ~ 1177363 (-) True AMCG00019024
AMCG00019035 mRNA upstream 1830 1324863 ~ 1344760 (-) True AMCG00019035
AMCG00019037 mRNA upstream 36788 1359821 ~ 1362959 (-) True AMCG00019037
AMCG00019038 mRNA upstream 104184 1427217 ~ 1432739 (-) True AMCG00019038
AMCG00019039 mRNA upstream 131518 1454551 ~ 1470419 (-) True AMCG00019039
AMCG00019044 mRNA upstream 158286 1481319 ~ 1488123 (-) True AMCG00019044
TU38605 other downstream 144048 1175089 ~ 1177566 (-) False AMCG00019024
TU38607 other downstream 146631 1174524 ~ 1174983 (-) True G30849
TU38606 other downstream 146631 1174536 ~ 1174983 (-) False G30849
TU38514 other downstream 687321 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 699539 619039 ~ 622075 (-) False AMCG00019007
TU38861 other upstream 382866 1705899 ~ 1710543 (-) False G31035
TU38924 other upstream 632635 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 715614 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 854947 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3609805 4932838 ~ 4935996 (-) False AMCG00019129

Expression Profile