RNA id: AMCG00019044


Basic Information

Item Value
RNA id AMCG00019044
length 1185
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00019044
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1481319 ~ 1488123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCATAGGATCTGCATTCACTTCCATTGTGGCCAAGCACCAGACCTCAACTCTCAAAGTGCGCAGTAGTTGCAGTCAGTGTGGATTAATCCCTCTCTCAGCCCACAGGGAGCCCCGGATCGTGGGCGGGGAGCAGCCCTGCTCTGTGGGAGTGGAGCTTCAGTTTAGGGACCAGTGGGGGACACTGTGTGACTCAGACTGGGACCTGCAGGACGCCAGTGTGGTGTGcagacagctgcagtgtggGGAGGCAGTGGCCATACCTGGGGGGACTCACTATGGGGAAGGGAGGGGCCCCATATGGGACCAACAGCTGGACTGTCGGGGCAACGAGTCCACTGTGTTCGAGTGTCCCGTCTCCACCAAGAAAGGACCAAACTGCACCCACAGAAACAATGCCAGTGTGATTTGTACAGGACAGGGGGGTCCCAGGCTGGTGGGGGGAGAGAGCCGGTGCTCGGGGCGAGTGGAGGTGCTTCGTGGGGCGCTCTGGGGCTCAGTCTGCGATCGCCACCTGGACCAGCAAACCGCTGATGTCATCTGCAGACACCTCCAGTGTGGGGGGGCCGCCGCCACCCCCAGAGGAGCCCCCTATGGAGCCGGGAGTGGCCCGCTGTGGAAGGACAGGTTCCAGTGCAGTGGGAGCGAGGGGCGCCTGGGGGACTGTCCTCTGTCCTGGGACCAGGAGGACTGTGGTCAGGGCAGTGTGGCCAGCGTGGTCTGCTCAGGTCCGCAGCTGAGGCTGGTGGGGCCGGAGGGCCGGTGCTCGGGCAGGGTGGAGGTGTGTCTCATGGGGGTCTGGGGGACGGTGTGCGACGACTCCTGGGATCTCCAGGACGCCCGTGTGGTGTGCAGAGAGCTGGGCTGTGGCTCCGCTCTCTCCGCACCCCAGGAGGCCCATTGGGGTGAAGGTAATGGGACGCTGTGGCTGGACGAGGTGAGCTGCAGGGGCACAGAGAGGGCTCTGCTGGAGTGCCACTCCTCCCCCCCAGGGAGCCATGACTGCACACACAAGGAGGACGCCGCTGTGCTCTGCGCAGGACCTGATGCCCCTGTCACTTCGGCCCCTGTGGCTGATCCAGCAGAAGGTGTGTCTAAGGAGTATGAAGCTGTTTATGAGGAGATTGATCAGAAGTCCCATCTGGATCGGAGTGACAGTGGAGACGCCAGTGTCCCGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38669 lncRNA downstream 123156 1357308 ~ 1358163 (-) True G30900
TU38644 lncRNA downstream 224343 1256680 ~ 1256976 (-) False AMCG00019031
TU38634 lncRNA downstream 248754 1226830 ~ 1232565 (-) True G30871
TU38565 lncRNA downstream 427434 1051085 ~ 1053885 (-) True G30823
TU38546 lncRNA downstream 587129 887649 ~ 894190 (-) True G30809
TU38707 lncRNA upstream 17441 1505564 ~ 1505917 (-) True G30932
TU38839 lncRNA upstream 101456 1589579 ~ 1590721 (-) True G31018
TU38860 lncRNA upstream 217776 1705899 ~ 1708750 (-) True G31035
TU38864 lncRNA upstream 244462 1732585 ~ 1733587 (-) True G31038
TU38891 lncRNA upstream 361415 1849538 ~ 1851593 (-) True G31064
AMCG00019039 mRNA downstream 10900 1454551 ~ 1470419 (-) True AMCG00019039
AMCG00019038 mRNA downstream 48580 1427217 ~ 1432739 (-) True AMCG00019038
AMCG00019037 mRNA downstream 118360 1359821 ~ 1362959 (-) True AMCG00019037
AMCG00019035 mRNA downstream 136559 1324863 ~ 1344760 (-) True AMCG00019035
AMCG00019034 mRNA downstream 158159 1321711 ~ 1323160 (-) False AMCG00019034
AMCG00019045 mRNA upstream 5933 1494056 ~ 1495596 (-) True AMCG00019045
AMCG00019043 mRNA upstream 21000 1509123 ~ 1532289 (-) True AMCG00019043
AMCG00019049 mRNA upstream 120875 1608998 ~ 1616701 (-) True AMCG00019049
AMCG00019048 mRNA upstream 128625 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019047 mRNA upstream 136345 1624468 ~ 1628122 (-) True AMCG00019047
TU38662 other downstream 157723 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 158286 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 303753 1175089 ~ 1177566 (-) False AMCG00019024
TU38607 other downstream 306336 1174524 ~ 1174983 (-) True G30849
TU38861 other upstream 217776 1705899 ~ 1710543 (-) False G31035
TU38924 other upstream 467545 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 550524 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 689857 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3444715 4932838 ~ 4935996 (-) False AMCG00019129

Expression Profile