RNA id: AMCG00019046



Basic Information


Item Value
RNA id AMCG00019046
length 642
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00019046
representative False

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1585825 ~ 1605545 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGTAgctaatAAGTCTCCCTCCCAGACGTCCAAGGAGCCAGTGGAGACGGTGACATACTCCAGAGTGTCCTGCCAGGTCAAGGAGCCAGCCCTGCCCCTCCAGCCAAGTGTCAGAGAAAGAGGAACTGATGACAGGAAGCGACCTGAAGCCAAACAGGAACTGAACGTCAGTAAAGAGCTGCTGTCCCTGAAGGAAGACATGGCTCTGattgtcttcctcctcctcgctAGTTTTCCAGgtggTGACGCCGTGTCAACACTGAGAAAGACCAGTGTCCTGAGAGGAGCATCAGTCACCATCCCTTGTCACTATGAGGACAAATACAAAAGCCATGTGAAATACTGGTGCTCTGGATATTACTGGACAAGCTGTGAGTCTCTAAAAAGGACTGACTCTCTAATCACACAGAGTGATAAAGTGTCCATCTCTGATGATCCAGCCCAGGGAGTCTTCACTGTGACCATGAGGGGACTGAAGACGGGGGACACAGGCTGGTACTGGTGTGCTGTGGAGATAGGGGGGTACGGCACACCTGATGACAGAGCATCCCTGTACCTCACAGTTACTGAAGTCACGCGAGGGGACACATACGTCACGATGTTATCAACGAACACGGCATCACAACAGCAGGTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38715 lncRNA upstream 4336 1581271 ~ 1581489 (+) True G30939
TU38713 lncRNA upstream 32963 1552644 ~ 1552862 (+) True G30937
TU38684 lncRNA upstream 169662 1415951 ~ 1416163 (+) True G30910
TU38675 lncRNA upstream 175867 1409471 ~ 1409958 (+) True G30903
TU38651 lncRNA upstream 266808 1318622 ~ 1319017 (+) True AMCG00019033
TU38795 lncRNA downstream 272786 1878331 ~ 1885551 (+) True AMCG00019064
TU38814 lncRNA downstream 332275 1937820 ~ 1938218 (+) True G30996
TU38724 lncRNA downstream 433102 2038647 ~ 2083269 (+) True G30943
TU38952 lncRNA downstream 491636 2097181 ~ 2099152 (+) True G31104
TU38970 lncRNA downstream 571603 2177148 ~ 2177356 (+) True G31117
AMCG00019042 mRNA upstream 4202 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019041 mRNA upstream 27960 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019040 mRNA upstream 156843 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019033 mRNA upstream 264332 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019030 mRNA upstream 349644 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019050 mRNA downstream 23280 1628825 ~ 1641050 (+) True AMCG00019050
AMCG00019052 mRNA downstream 38822 1644367 ~ 1658275 (+) True AMCG00019052
AMCG00019053 mRNA downstream 125350 1730895 ~ 1740826 (+) True AMCG00019053
AMCG00019051 mRNA downstream 140177 1745722 ~ 1758318 (+) True AMCG00019051
AMCG00019054 mRNA downstream 156129 1761674 ~ 1762096 (+) True AMCG00019054
TU38640 other upstream 332090 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 348188 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 584612 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1028921 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 1187153 395501 ~ 398672 (+) True G30589
TU38794 other downstream 256284 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 536285 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 538376 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1488933 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1598242 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile