RNA id: AMCG00019053


Basic Information

Item Value
RNA id AMCG00019053
length 1386
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00019053
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1730895 ~ 1740826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGTCCTCACTGCAGATGGCGGCACCGCGgTGAGCCAGGGCAATGTGCCAGGCATCGAGAGCGCGTCCCTGGCGATGGACAcagaggagggggtggaggtgTTCCTGAAGAAAACCAAGAAGAACCACAAGACCATGAATGTGAAAGTGAGTGGCTCTGGGATGATGCGAAGCAGCGTCTGTTCGGTGTCTGGTTCGGTTTGGTTCTGCTTTGCCTTTGCCTTGTTTGGTCTGGTCTTGATCTTGGGACCGGGCCTACGGGCAGAACCACCCCTGCACGGCCGGGCCCCTATAAACACTGTGGACCTGGATCTGCTGCCAGTCCGAGTGTTCCCGCCTGGTAACCTGGGTCTTTACCTGCATTCCTGTGACCCCCCGATTATCCATGGCAACCTGACCTGCGACACCATCTTCATCCAGCACAACGGCCTCATCAAGATCGGCTCAGCATTCCCGGAGGCGGTGCACGGGAGAGTGCGGCCCCACCGAGACGAACAGAGGAACCTGCACTTCTTCGCTCCAGAGTACGGCTTGGCGGAGGACGGCTATGCGATTGACATCTTCTCCTTCGGGATCTGTGCCCTGGAGATGGCGGTGTTGGAGATCCAGGCCAATGGGGATGCCCAGGTCTCCAATGAGGCCATCACCCTCGCCGGCCAGTCGCTCGAGGACCCGCTCATGAAGGAGTTCATCCAGTCGTGTGTTCGGCCCGACGCACAGCAGCGGCCCACAGCGCACGACCTGCTCTTCCACAGGGTGCTGTTCGAGGTGCATTCGCTCAAGCTGCTGGCAGCGCATTGCCTCATCAACAACCAGtACCTGCTGCCAGAGAACTGTGTGGAGGAGAAGACCAAGTCCTTTGACCCCAACGCCGTGATGGCCGAGATTCAGCACAGTGACCGGGCCGGCGTGCAGCTGAGGTACTCCCATGTGTCGCCCCTGGAGCTGGACAAGTTCCTGGAGGACGTGAAGAATGGGATCTACCCACTCATGAACTTTGCATCCCAGCGGCCCCACCCCCTGCCCCGCGCCCTGTCCCTGTCCCAGGAGCACATGGAGACTGTGAAGACCCCCACCCCCGAGCCCCAGGAGATGGAGACCAGGAAGGTTGTCCAGATGCACTGTAACCTGGAGTCCAACGAAGAAGGGACCAGAACACACcTTACCCTGTTCCTGAAGATGGAGGACAAACTGCACAGACAGCTGAGCTGCGACATCCTGCCCACCGACAGCTCAAAGGACCTGGCCAGTGAACTGGTGCACTACGCCTTCATCAGTGAGGAGGACTGTGAGAAGCTGGCTGGCTTCCTTGAGGAGTCCTTGCTGAAGCAccggggcgggggggtgggcaGCTCCTCTGGGGTCATGATGATGATGCACTGA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38719 lncRNA upstream 131666 1597798 ~ 1599229 (+) True AMCG00019046
TU38720 lncRNA upstream 131666 1597798 ~ 1599229 (+) False AMCG00019046
TU38721 lncRNA upstream 131666 1597798 ~ 1599229 (+) False AMCG00019046
TU38715 lncRNA upstream 149406 1581271 ~ 1581489 (+) True G30939
TU38713 lncRNA upstream 178033 1552644 ~ 1552862 (+) True G30937
TU38795 lncRNA downstream 137505 1878331 ~ 1885551 (+) True AMCG00019064
TU38814 lncRNA downstream 196994 1937820 ~ 1938218 (+) True G30996
TU38724 lncRNA downstream 297821 2038647 ~ 2083269 (+) True G30943
TU38952 lncRNA downstream 356355 2097181 ~ 2099152 (+) True G31104
TU38970 lncRNA downstream 436322 2177148 ~ 2177356 (+) True G31117
AMCG00019052 mRNA upstream 72620 1644367 ~ 1658275 (+) True AMCG00019052
AMCG00019050 mRNA upstream 89845 1628825 ~ 1641050 (+) True AMCG00019050
AMCG00019046 mRNA upstream 125350 1585825 ~ 1605545 (+) False AMCG00019046
AMCG00019042 mRNA upstream 149272 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019041 mRNA upstream 173030 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019051 mRNA downstream 4896 1745722 ~ 1758318 (+) True AMCG00019051
AMCG00019054 mRNA downstream 20848 1761674 ~ 1762096 (+) True AMCG00019054
AMCG00019057 mRNA downstream 42951 1783777 ~ 1831277 (+) True AMCG00019057
AMCG00019056 mRNA downstream 101962 1842788 ~ 1852369 (+) True AMCG00019056
AMCG00019064 mRNA downstream 121490 1862316 ~ 1885238 (+) False AMCG00019064
TU38640 other upstream 477160 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 493258 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 729682 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1173991 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 1332223 395501 ~ 398672 (+) True G30589
TU38794 other downstream 121003 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 401004 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 403095 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1353652 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1462961 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile