RNA id: AMCG00019055


Basic Information

Item Value
RNA id AMCG00019055
length 3402
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00019055
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1685165 ~ 1700550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAtctgggctgtgctgtgctggctCGGCGTCGGCCTGTGTGAGCGCTGCAGGCGGCTGCCCGGAGAGCAGAACGTGGCTCTGTTGGGTGAGGCTGTCCAGTCCTCCACGTACATCTACTACAGCGTTGCCCAGAATGCCATCGACGGCTCGAAGAGCAACTTTTTCAACCTGAAGACCTGCATCCTCTCGGAGTACCAGAACCAGCCGTGGTGGAGGGTGGACCTGCGGAACTTCTACAGTGTCTCTTCGGTCACCATTATTCCACTGGCCGGATGGGGTGTCATGATCGAGGGAGCGGAGGTCCGTGTGGGGAATTCTCTCCGAGACGAGGGGAATCAGAATTACAAgtGTGGCTCCATCCCACCCTTGACCGATGACTCCTTTCCCACCCTGTGCTGCCAGGGCATCACCGCTCGCTATGTGAACGTGGTCATTCCTGACAAGCCCCAGTACCTGGTGTTCTGCGAGGTGGAGGTGTTGGTGACCTGCTACAAAATCTGCTTTGAATGGTATTCTGGAGTTATCCTGACTATTGGCTTCCctttactgcattttatttttgtttacacagAGCAAAACGTAACTCTGAATACGGTGGCTTCCCAGTCCTCCACAGAAGATGAACTGGGGCTGGCTCTTAATGCGGTGGACGGTAACCGTGATGATATCTATGACCACGGGAGCTGCTCTCAAACCGAACTCCAGTTCTGGCCCTGGTGGAGGGTGGACCTAGGGTTCACCCACCTGGTCACCACAGTCACCATCGTCAACCGGAAAGACTGCTGTCACGAGGACCTGCGTGGTGCGGAGGTGCGGCTTGGGGACTCTGTGCTGAACGCAGGAAGGGACAACTACAGGTGCGGTGTGATAATCTCCACAGGCCCTGGCTCCGTGCACACCGTCTGCTGCGACGGGCGGAAGGGGCGCTACGTCACCATCACCATCCCTGAGCACCAGCGCCACCTCACCCTGTGTGAAGTGGAGATCTCCGCCGTGCCGCTTCCCAGCTGCTTTCCAAACTACTTCACAGGTACCAGTGTCCATCATCGTGGGCCCAGTGTGCTGAACCTCTGCCTGGTGCTTTGGGAGGTCAATGTGGCGCACCTGGGCACGGCTGTCCAGTCCTCCAATGAGAGCAGCCAGGGCGCCGCACTGCACGGGGTCGACGACAACTACAGCCCCTCCTACTTCCACGGCTCCTGCACCAGCACTGGCCGGCAGAACAACCCTTGGTGGCGTCTGGAGTTGCCGGGGATCTATGCAGTGACCCTGGTGACGGTGGTGAATCGGGCAGATGACTGCTGCTGGAAGGACCTGAAGGGAGCTGAAGTCCGTGCAGGAGAGTTGCTGGAGAGGCACGGCAACATCAACCCCAGGTGTGGACAGGTGACCCACGCCACCAGAGGCTCCTTCCACATGTTCTGCTGCTGTGGCAAGACCGCCCGCTACGTCAACATCGTCCTCCCTGGGCGCTCACGGGTcctgtctctgtgtgaagtgGATGTCTTGGGGGTGCCTATCAGCGAAGGCAGTGTCCGCATTCTTGGAGGTGAAGTAGGGGGCGTGGTGGTGGATGGTAATGTAGCTCTGCAAGGGGAAGCTGTGCAGTCCTCCACCTACAACAGCATCGGCGACGCAGAGAACGCCATCGACAACAACTGGAGCGCCGCCTTGTACGAGGCGTCCTGCACGCTGACTGAACACCAGCCAGCCCCCTGGTGGAGAGTGGACCTGCGGAAGAAGTACCGGGTGTCAGCGGTGGTGGTGAAGAACCGGCAGGATTGCTGCTTCCGTAGGCTGAAGGGCGCCGAGGTGCGACTAGGCGACTCCCTTGTCAACAATGGAAATGACAACTACAGGTGTGGTGTGATCAAGGGGACCTATCTGGGCTCGGTCCACGTGCTCTCCTGTGCCATGAGAGTGGGCCGCTATGTAAACGTGCTCTCCAGGAAGACCACTTTCCTGACCCTGTGTGAAGTGGAGGTCTATGGAGTCGCGGTGCCCATATGCAGACGGCTGCCAGGGGGTAATGGACAATTTCTCTTCCTTCCACAGCTGGAGCGTCTCATTAGGAAGGAAGGCAGGCAGAAAGGTCTGGGAGATGTGATGGGGAAAAATTGGGAAAGTTTTGCTCCTGGGTGGCGTGCTAGTTTTTATGAGCAGTTTAAGAACTGTGTCTGCTGTCAAGGTAAAACTTCCCTCTCCTCCTTTCCTCTCCAAACAGAAAAGAACGTGGCACTTTTAGCTCAGACGACCCAGTCCTCCACCTTTACCGAGACTGGAGTGTACCAGATGTCCCCCTGGTGGCGCGCTGACCTGAAGATCCCAGTGCGGGTGTCTGCTGTCGTGGTGTTCAACAGGATGGACTGCTGTCACGAGCGCCTGATGGGGGCGGAGGTGCGACTGGGCAACTCTCTGGACTTTGCTCATGGAGCGGTTCCCCCTGCAGGTGTGGGATCATCAACACCACGTGGCCTGGCTCAGTGCACACCTTGTGCTGGGCGCCATGTCAACATCCTTATCCTGGCGGCAGAGAAACGCATCCTGTCTCTGTGCGAGGTGGAGATCTACGCAGTGTGCCCATCCAAGGTCTGCCCGCGCTTCCCGAGAGcaCTTCAGCACTTCATCATTTCAGCACTTCTTTATTTCAGCACATCAGCACTTCAGCACATCAGCCCTTCATCATTCAGCACATCAGCCCTTCATCACTTCATCACATCAGCCCTTCAtcacttcatcacttcagcacttcaccacatcagcacttcatcacttcatcccttcatcacttcagcacatcagcacttcatcacttcagcccttcagcacttcatcacttcagccCTTCATCACTTCATCACTTCTGCACTTCAGCACATCAGCACATCAGCACTTCAgcacttcatcacttcatcacttcatcacttcagcacttcagcacatcagcacttcatcacttcagcaCATCAGCCCTTCATCACTTCAGCACTTCAGCCCTTCATCACTTCAgcacttcatcacttcatcacatcatcacttcatcacttcagcacttcagcatttcatcacttcatcacttcatcacATCAGCCCTTCATCACTTCATCACATCAGCCCTTCATCACTTCAGCACTTCAGCCCTTCAGCACATCAgcacttcatcacttcagcccttcagcacttcatcacttcagcccttcatcacttcagcccttcagcacttcagcacatcagcacttcatcacttcatcacttcagcccttcatcacttcatcacttcagcccttcatcacttcagcacatcagcacttcatcacttcagcccttcagcacttcatcacttcagccCTTCATCACTTCAGCCCTTCAGCACTTCAGCACTTCATCACTTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38839 lncRNA downstream 94444 1589579 ~ 1590721 (-) True G31018
TU38707 lncRNA downstream 179248 1505564 ~ 1505917 (-) True G30932
TU38669 lncRNA downstream 327002 1357308 ~ 1358163 (-) True G30900
TU38644 lncRNA downstream 428189 1256680 ~ 1256976 (-) False AMCG00019031
TU38634 lncRNA downstream 452600 1226830 ~ 1232565 (-) True G30871
TU38860 lncRNA upstream 5349 1705899 ~ 1708750 (-) True G31035
TU38864 lncRNA upstream 32035 1732585 ~ 1733587 (-) True G31038
TU38891 lncRNA upstream 148988 1849538 ~ 1851593 (-) True G31064
TU38907 lncRNA upstream 169821 1870371 ~ 1881183 (-) True G31074
TU38909 lncRNA upstream 172195 1872745 ~ 1874348 (-) True G31075
AMCG00019047 mRNA downstream 57043 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019048 mRNA downstream 67474 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019049 mRNA downstream 68464 1608998 ~ 1616701 (-) True AMCG00019049
AMCG00019043 mRNA downstream 152876 1509123 ~ 1532289 (-) True AMCG00019043
AMCG00019045 mRNA downstream 189569 1494056 ~ 1495596 (-) True AMCG00019045
AMCG00019058 mRNA upstream 132921 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019059 mRNA upstream 181904 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019067 mRNA upstream 237995 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019066 mRNA upstream 285555 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019065 mRNA upstream 319815 2020365 ~ 2030234 (-) True AMCG00019065
TU38662 other downstream 361569 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 362132 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 507599 1175089 ~ 1177566 (-) False AMCG00019024
TU38607 other downstream 510182 1174524 ~ 1174983 (-) True G30849
TU38861 other upstream 5349 1705899 ~ 1710543 (-) False G31035
TU38924 other upstream 255118 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 338097 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 477430 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3232288 4932838 ~ 4935996 (-) False AMCG00019129

Expression Profile