RNA id: AMCG00019059


Basic Information

Item Value
RNA id AMCG00019059
length 609
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00019059
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1882454 ~ 1896432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGACGACTGTAACCTGGTGATCTACAAAAAGGACGACGAGCCCATGTGGCAATCCAACACCCAACACCCGGGTGACTGCAAGACCTGCCGCCTGACCCTGCAGGATGATGGGCACCTGGtcatagagagagagggcaaaCAAATCTGGTCCTCTGCATCCTCCAAAGCGGCGTCTGCCTACCGTGATCGGCCCCACGCCAATACTGGTGTCGCCTATGACGGCAAAGCATCCGGGACACGGTCGTGGGGGCTTCCGCGTCAGGGGCTGTGCTGCCCTGCGGACCCGGCCCTGTGGCCCTGCGGAGCCCTCCTCCTCGCCCTGGAAAAGCAGGAAACACAAACCAGTCACTCTCCAGAGCTGCACAACTTCCGACCAGCCCGTGGCGCACCGGCCCGGGCTCAGCAGCCCCCTCCTCCCGCCCCGCATCCGGCAGCTCTGACGGTGGCCTGCCCCATCCCGAAGCCCCGAGAGAGGCCGAACgggtcagtgtgtgtccagCACCTGCTGCTCTGCCTGCTGCTGCAGCAGTCTGTTGATCCGGTCCTGCACACTGCTGGCCTGCTCCTCACTGCCGTCAAAGGGAACCGAAACACTGAATATTAA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38907 lncRNA downstream 1271 1870371 ~ 1881183 (-) True G31074
TU38909 lncRNA downstream 8106 1872745 ~ 1874348 (-) True G31075
TU38891 lncRNA downstream 30861 1849538 ~ 1851593 (-) True G31064
TU38864 lncRNA downstream 148867 1732585 ~ 1733587 (-) True G31038
TU38860 lncRNA downstream 173704 1705899 ~ 1708750 (-) True G31035
TU38926 lncRNA upstream 46371 1932341 ~ 1933414 (-) False G31082
TU38845 lncRNA upstream 89734 1975704 ~ 2061961 (-) True G31021
TU38995 lncRNA upstream 290192 2176162 ~ 2176966 (-) True G31137
TU39093 lncRNA upstream 518444 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 588714 2474684 ~ 2474983 (-) True G31234
AMCG00019058 mRNA downstream 40968 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019055 mRNA downstream 181904 1685165 ~ 1700550 (-) True AMCG00019055
AMCG00019047 mRNA downstream 254332 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019048 mRNA downstream 264763 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019049 mRNA downstream 265753 1608998 ~ 1616701 (-) True AMCG00019049
AMCG00019067 mRNA upstream 52575 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019066 mRNA upstream 100135 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019065 mRNA upstream 134395 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019070 mRNA upstream 152729 2038699 ~ 2049084 (-) True AMCG00019070
AMCG00019069 mRNA upstream 211014 2096984 ~ 2098809 (-) True AMCG00019069
TU38861 other downstream 171911 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 558858 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 559421 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 704888 1175089 ~ 1177566 (-) False AMCG00019024
TU38606 other downstream 707471 1174536 ~ 1174983 (-) False G30849
TU38924 other upstream 69698 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 152677 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 292010 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3046868 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11776146 13662116 ~ 13665230 (-) True G33106

Expression Profile