RNA id: TU38795


Basic Information

Item Value
RNA id TU38795
length 1825
lncRNA type sense_over
GC content 0.51
exon number 6
gene id AMCG00019064
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1861829 ~ 1885551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACTCTTTCCTGATGCCATCCTCATCTGTGCTCTGTTTTTGTTAGCCAATCCAGAAAGGACCACCCTGTTTTGGTTGTGCGATTCCCTTTGACGGCAGTGAGGAGCAGGCCAGCAGTGTGCAGGACCGGATCAACAGACTGCTGCAGCTGGAGGGGGAGCAGCAGAATCGGAGCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGCAATGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGGCTCCACTGCAGAAGGAGGCCGGACACACAGAGGACAAGGACTCCCCACACGAGGAGACTTTGGTTGCCCCACCCACTCCTGATAACCCAGTTACCAAACCAAAGAAGGCCAAAAGGAAGGGCGAGGAGGAGGGCTCCGCAGGGCCACAGGGCCGGGTCCGCAGGGCAGCACAGCCCCTGACGCGGAAGCCCCCACGACCGTGTCCCGGATGCTTTGCCGTCATAGGCGACACCAGTATTGGCGTGGGGCCGATCACGccttcctctctctctcttgtgaaGTGAGGCTCCGTGACCGAAGAGCAGCTCCACTCAAGCATCCAGACCAACCCAGTGGAGAGAGAATCATTACAGAGAGCCGGCAGAGACCATAGCGACCAGCATATCAATCAATCTGAATTTACGCATTGTTAcactttatacacacacacacatatatatacacgtgtaCTTTCACTTGCATGACAGCTGGGGTGTGGGGCagctttaaatgtgtttctgcaGTGTATGTGGAACCAACCTTCATTATGAGCCTGAGTACCAATCCTTAAGAGCAAGAGGATGGAAAAGCTAAATAACTCCAAAAGGATTTGATTTCAGGGGTAAACACAACAGACCCCAGCATGGTTTGATCTTGATTTACTCAGCTAAAGCTTCACTGGCCTTATCTGTGTCACCGCCCGGCTCCCATCGGTACATTACATACGATGCTCAAGACATGGTGTTATATGTGCTCCCCTCCAGGGGTGGCCAgtcctgttcctggagagccgcacCCCCGCAGGTCTCTTTATATCACCAACCCCCGAGTGAACTTTAACGCCTTTAGACTGACGAAGCTCGACAATCAAATCCATTAATCAAAAGTTATGGTTAACGGTTTGGATAAGACCAGCCCCAGGACACACGGTGGCTCTGCGGGACCAGGGTTGTCCAGCCCTGCTCTACACTTGTCCCATTGTGTCTTTTCTCCCTCGCTGCATCTTCCAGCATTACTGACCCTCTGTGCTTCATTCACACCTGATCTCACTGTTTACTTGACCTGAAATAAGCAGGTCCCAGggtgccccctcccccaccaactaattaaaaagaacacaATCCTTGCCTGATTGCAGctcccctgtgtgtctgtcatttGTGTTGTCCTCTGAAGACTAGTAGTGTGACGGTCTTGTGCCAAACCCCTCCCAGTGGAGGTGCCACGAGCTATAAACAGAAGCGTGGAAAAATGCACGTGGGTGCAAACTCCCTGTCCAGTCCTTAGCCGTTGTATGCAGATGCTCTTCTCACCGCACTGTGTGAAATAATGCTGTTCCGGAGAATATGGAGCATTTCCACATGGGCACATTTATCACACCGTGCACTCAAATCACCAGCCAACTCCAGAAAGGCCAGGCTTTCCCCTCCTCCAGTCACCCTAACTCATAGCTTTGTTTTGATGTTATCAATATCATTCCAGCTTTGCTAAAAGGAGCTTTATAGTGACCAGGTATAGGCAAGTGATTACctgacaaaaaacattaaacaaattgtaGATCGTCTCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38719 lncRNA upstream 279102 1597798 ~ 1599229 (+) True AMCG00019046
TU38720 lncRNA upstream 279102 1597798 ~ 1599229 (+) False AMCG00019046
TU38721 lncRNA upstream 279102 1597798 ~ 1599229 (+) False AMCG00019046
TU38715 lncRNA upstream 296842 1581271 ~ 1581489 (+) True G30939
TU38713 lncRNA upstream 325469 1552644 ~ 1552862 (+) True G30937
TU38814 lncRNA downstream 52269 1937820 ~ 1938218 (+) True G30996
TU38724 lncRNA downstream 153096 2038647 ~ 2083269 (+) True G30943
TU38952 lncRNA downstream 211630 2097181 ~ 2099152 (+) True G31104
TU38970 lncRNA downstream 291597 2177148 ~ 2177356 (+) True G31117
TU38999 lncRNA downstream 303417 2188968 ~ 2209189 (+) True G31141
AMCG00019056 mRNA upstream 25962 1842788 ~ 1852369 (+) True AMCG00019056
AMCG00019057 mRNA upstream 47054 1783777 ~ 1831277 (+) True AMCG00019057
AMCG00019054 mRNA upstream 116235 1761674 ~ 1762096 (+) True AMCG00019054
AMCG00019051 mRNA upstream 120013 1745722 ~ 1758318 (+) True AMCG00019051
AMCG00019053 mRNA upstream 137505 1730895 ~ 1740826 (+) True AMCG00019053
AMCG00019060 mRNA downstream 90039 1975590 ~ 1980497 (+) True AMCG00019060
AMCG00019063 mRNA downstream 131595 2017146 ~ 2030576 (+) True AMCG00019063
AMCG00019062 mRNA downstream 145703 2031254 ~ 2034414 (+) True AMCG00019062
AMCG00019061 mRNA downstream 176166 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019068 mRNA downstream 284525 2170076 ~ 2174807 (+) True AMCG00019068
TU38794 other upstream 6952 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 624596 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 640694 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 877118 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1321427 554766 ~ 556904 (+) False AMCG00018999
TU38962 other downstream 256279 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 258370 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1208927 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1318236 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 1318236 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile