RNA id: AMCG00019066


Basic Information

Item Value
RNA id AMCG00019066
length 801
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00019066
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1986105 ~ 2011157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACGGATGGGCCTGGATGCGTTTGGACATCAGCCGGACCTTCCTGCACGAAGTCTGGGTCGCCGCCATCCAGGAACCTTTTATCCTAGAGAACAGAAGAGTAGAGATAGCAACAGTAGCCGATTCCTGTGCAGGGAGAGTGCATGTCTATGACAGAGGGCAAGAGGGAACAGTGTGCAGCAACGGCTTCGGTCTCAGTGAAGCTCATGTGGTCTGCAGACAGACTGGCtgtggagaggcagagacagtTTCTAGAATGCGAAGCCCTGTATCTGATGTCCCCATCTGGCTGGACAGGGTGCGGTGCTCTGGGAATGAGTCGTCTCTCTGGGAGTGCGCCTCCGATCCCTGGGGCCACCATGACTGCGATCACACAATGGACATTCGTATTGTGTGTAAAGCCCACAGGGAGCCCCGGATCGTGGGCGGGGAGCAGCCCTGCTCTGGGAGAGTGGAGCTGCAGTTTGGGGACCAGTGGGGGACACTGTGTGACTCAGACTGGGACCTGCAGGACGGCAGTGTGGTGTGcagacagctgcagtgtggGGAGGCAGTGGCCATACCTGGGGGGGCTCACTATGGTGAAGGGAGGGGCCCCGTGTGGGACGAGCAGCTGGACTGTCGGGGCAACGAGTCCACTGTGTTCGAGTGTCCCGTCTCCACCAAGAAAGGGCCAAACTGCACCCACAGAAATGACGCCAGTGTCATTTGTTCAGGAAGGAGTGGTCTACCCTCAACAGGGTCAGGACTGGCCTCAGACCAAGCCCTCTATGTGCCTCTGGGGCAGATCAAGCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38926 lncRNA downstream 52691 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 89673 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA downstream 89673 1885673 ~ 1896432 (-) False AMCG00019059
TU38907 lncRNA downstream 104922 1870371 ~ 1881183 (-) True G31074
TU38995 lncRNA upstream 165005 2176162 ~ 2176966 (-) True G31137
TU39093 lncRNA upstream 393257 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 463527 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 468781 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 482680 2493837 ~ 2494055 (-) True G31244
AMCG00019067 mRNA downstream 29045 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019059 mRNA downstream 100135 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019058 mRNA downstream 144619 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019055 mRNA downstream 285555 1685165 ~ 1700550 (-) True AMCG00019055
AMCG00019047 mRNA downstream 357983 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019065 mRNA upstream 9208 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019070 mRNA upstream 27542 2038699 ~ 2049084 (-) True AMCG00019070
AMCG00019069 mRNA upstream 85827 2096984 ~ 2098809 (-) True AMCG00019069
AMCG00019071 mRNA upstream 129364 2140521 ~ 2141953 (-) True AMCG00019071
AMCG00019074 mRNA upstream 180239 2191396 ~ 2203852 (-) True AMCG00019074
TU38861 other downstream 275562 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 662509 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 663072 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 808539 1175089 ~ 1177566 (-) False AMCG00019024
TU38606 other downstream 811122 1174536 ~ 1174983 (-) False G30849
TU38923 other upstream 27490 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 166823 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 2921681 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11650959 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12480734 14491891 ~ 14492218 (-) True G33163

Expression Profile