RNA id: AMCG00019071



Basic Information


Item Value
RNA id AMCG00019071
length 568
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00019071
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2140521 ~ 2141953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGAGGGGCCACAGAGCCCAGCCCTCAGACCTGCTGCTCTCCCAGCGCTGAGAGGAAGATGAGCCGCCTGCTGCCTGTGCTGCTGCTCACTGCCGGGGCCCTGCTGGCCCCCACCGAGGGGCAGAGCCCCTTCCACCTCAACCAGCTGGAGCAAAGAGCTGTGAACGCTGTTATTAAACACTTCAATGGGAGTAACCGCTTGAAGAAAGCCTTCCACATCCACACAGAGTCAAGGGTGTCTGCGACCACTGTCACAGAGGCTGGTGGGACCTTCCACAGCTTGGAGATCTATGTGAAGGAGACGGACTGTCCTCATGATGTCCCCTCAACACAGGACTGCAAGATCCTGCCCAGCGGGGCACTGAGGATCTGTAAGGCATGCTTTGCAGTCACTGCCCCCGAAGACTTCCACAGCGCCAAGAGATACATCGACTGCACCCCTGTACGAGTCATGAACAAGTGTCGCCTGGCCACCTCCATGTCTGGGCCCTCAATCAGAGACCCAGGGGCTGCAACTCCGGTGCCAGAGACCCTGTCCTTCAGCTCCAGCCAAGTTCTGCCAGTTTAA

Function


GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38845 lncRNA downstream 78560 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 207107 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 244089 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA downstream 244089 1885673 ~ 1896432 (-) False AMCG00019059
TU38909 lncRNA downstream 266173 1872745 ~ 1874348 (-) True G31075
TU38995 lncRNA upstream 34209 2176162 ~ 2176966 (-) True G31137
TU39093 lncRNA upstream 262461 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 332731 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 337985 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 351884 2493837 ~ 2494055 (-) True G31244
AMCG00019069 mRNA downstream 41712 2096984 ~ 2098809 (-) True AMCG00019069
AMCG00019070 mRNA downstream 91437 2038699 ~ 2049084 (-) True AMCG00019070
AMCG00019065 mRNA downstream 110287 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019066 mRNA downstream 129364 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019067 mRNA downstream 183461 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019074 mRNA upstream 49443 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019073 mRNA upstream 66837 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019078 mRNA upstream 149547 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019080 mRNA upstream 161917 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019079 mRNA upstream 200645 2342598 ~ 2357855 (-) True AMCG00019079
TU38924 other downstream 57250 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 57250 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 429978 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 816925 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 817488 1321614 ~ 1323033 (-) False AMCG00019034
TU38988 other upstream 36027 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 2790885 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11520163 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12349938 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12349938 14491891 ~ 14558290 (-) False G33163

Expression Profile