RNA id: AMCG00019075


Basic Information

Item Value
RNA id AMCG00019075
length 3193
RNA type mRNA
GC content 0.68
exon number 17
gene id AMCG00019075
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2280642 ~ 2291671 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGCGTGTCTCTCCACAGCGCAGGCCGGAGCCGCTTCCCGCAGGAGCGCCGCGCACGCACCCGGCCCGCAGGACCCGCAGGACCCGCAGCGCCGCGGACATGGACTCCACTCCGACCATTGGGAACTTCTTCCACACACTGCGGGAGATGGGCTTCACCGAGACACAGATCCAGGCAGCGCTGCAGGCCGGACACTTCAGCGTCCCCGAGGCGGCAGAGTGgatgTTGCAGGGTGGCAGTCCGCGGCACAAGCTGGTGAAGCAGTCGCCCCCATCTGGAGGCACGGCGTTCTCAGCCTTCAACCCCCCCAAAGTCCAGGGCGGTGGCAACGCCAGAGCCGAGGGAGACGGCTCTGACCGGCAAGGTCCCAGCCCTCTGTCGTCCCCCACCGAGGCCGACACCCCGCCCCTGGGGTCCCGGATCAAGCAGGACAGGAACGGCTTCCAGGAGCTGCAGCGGGAACGCGTGGCCCAGGAGGCTCGGACCGAGAAGCAGCTCAAAAAGAAGGAGCGGGAGCTGGTGCTGAAGCGCATCGCTGACGACCGCAGGTGCCTGCAGGAGAAGAGTCAGCCCAGCAGCCAGTCAGAGCCCCCCGCCTCCGCCCCGCAGGGCCAGCGCCTGGGGGGCAAGATCCAGACCAGCGTGGACAACCACTGCGTACTCATGATCCGGCTCCCCTCAGGCGACTCGATGAGGGAGCGCTTCCCGGCTGACGCACCCTTGCGCAGCGTGGTAGAGCACATCTCCGGCCGCCACCCGTCTCTGGCCTCCTTCGCGCTGCTGCAGGGCTTTCCCAGGAAGCGCTTTGGCGAGGCGGAGCTGGCCTGCTCCCTGCGCTCCCTGGGCCTGACGCCCAACGCCGCGCTCTGCATCCAGACCACCCCCCCCGAGACCCCACCGGAGCCGCCGAGCCCCAGGCCCCTGCAGGAGGCCCCCAACGGGGTGCAGCTGCCGGGGGCCAATGAAGAGGAGGCTgcggaggaggaggcggaggaggagctGTTTCCACCTCCCATCCTGCCCTCTCCGCTCTGGGAGCAGGCAGTGGAGCATGCTGGGATACCGGGTCTGCAGCCTCCGTTCTCCGCGGTGTCCCATCGCTGGGGACGGGGGCACAAGCTGGTAgctggggaggtggaggaggggtCCAGCTCaggggaggaagaagaggaggaggaggagcagcctCTAGATGAAGAGAATGGAGATCCACAGTTGCTGTTCCCTGAACTGCCCACGAACGCAGCCCAGTCAGTCACAACCCAGGCGCTCATGGCAGCCATCTGGCTGGGTGTCTCCGAATCTCCCTCTCACCTTCTCTCGCTCTTCTCCGGTAGGGAGGGGGCCGAGGAGGCGGCGGCAGAGCCAGCTGTGGGCGCCGAGGACAGACGCGCCGTGCCAGGGGCGGCGGGGCAGGCGGCGGTGGATCGGCTGCAGAGAGCGGCGCAGCAGGACGAGCCTCCGGGGGGCACTGGGCACCCCTCGCCCCCGAAGAGGCCCTTCAGGACCCCCAGCGTGCCGTCCCTCTGCACCATGGCCACCCGTGCCACCGTCACGCTTATGACAGctcccAGTATGCAGTACAGCAGCAGTCTGTCGTGTCTGACCCCGGAGCTGGCCGAGCTGCTCCTGACCCACATGGCCCGGGAGCGGCTCCTGCGCCCGCGCACCCTGGAGCTCTTCTTCGGCTGCCCACTGCAGAAGTTCGTCCTCAACTGCTACCCGTACTCCACCAACGAGCTGCTGAGACAGCTGCGGGCCTTCACCGCCCTGAAGCAGCTCAGCCTGGTCTCCTCGCCCCTCATCACAGacGCGGGCCTCTCGGTGCTGTCCAGCCTGCAGAAGCTCCAGCATCTAAACCTGGCCGCCTGCTGCAAGCTGACCGACTCCTGCCTGCAGCACATCACAGGTCTGAAGGGCCTGTCCTACCTGTCCCTGGACCAGACCAAGGTGAGCGACTGCGGCATGGTGACGTACCTGCGTTCGGCGCCCTCTTCGCTCGCCCAGCTCAGCCTCAACCAGACCGGCGTGACTGAGGCCACCCTGGCGGCGCTGCCCCGCTGTGTGCCCCAGCTGCGGCTGCTCAGCCTCAAGCACACCAAGGTGAGCGATGTGTCGGCGCTGGCGGAGCTGCCCAGCCTGCAGACGCTGCACCTGGACGGGACGCGGGTGACCGAGGGGTCCCTGCAGCACTTGGCGGCCCACCCGTCCCTCTCCACACTCAGCCTGGCAGGCATACCGGTCGCAGATGGCAACCATGCCCTGGAGATCGTCTCCGGCCTCAGACTGACCCAGCTGACCCTGCCGGGGCGCCACTCTGTGACGGACAGCGGCCTGGTCTTCCTGTCCCACCTGGCGCTGCTGTCGGAGCTCGACCTCACGGACTACACCCACGTCACGGACCTTGGCACCGCACACCTCGCCACCATGACCAGGCTGAAGAAGCTGTCCCTCAGTAACACGCTGGTGTCGGACGCAGGGCTGCCCCCCCTGCGCGggctgcaggagctgctggagtTGTGTCTGGACCGCACGGCCGTCACCAGCCGAGGGGTGGCCACCTGCGTCTCCTGCCTGCCCCACCTGCAGGTACCTGGCCCCGTGCACCTCTACATCACATCCCTCCGTGTCCTGGGCCTGGCCAGCACGCAGGTGGGGGACTCGGTGGTGCGGCGGGGGCTCCTGCGCTGCACACAGCTGCTCAAGCTCAACCTGAGCCGCACGCGCATCACTGACCACGGTGAGGAAGAGGGCGTGGTagtggggggggaggaggaggaggaggacttCTCCAGCCTGTCCTACAGTCTGAAGTACCTGCGCCAGATGAGGCTGAGCCAGGTGAACCTGGACGGCACGGGGGTCACCCTGACGGGCATCGCCAACCTGCTCTCCTCCTGCCCCAACATCGCCAGCATCCGCGCCAGTCACACGCGGGCCCTGCTCCCCGACCAGGTCTCCGACGATGATGAAGACCAGGCCCCCTGAGCTGCGGTGGGCTGgccggggaggaggaggaggaagaggatggaaaggaggaggaggaggaggaggaggaggaggaggaggagcagctcTGAGACCTGAGTCTGAACCTTCGTTGGGCCGCCAGAGGACTGAGGTGCGAAACGGCTGTTTTTCTGAAGGCTGGACAGGAACGAGCGCGGGGGCCACGCTCGATGACACGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38999 lncRNA upstream 71453 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 88434 2191421 ~ 2192208 (+) True G31143
TU38970 lncRNA upstream 103286 2177148 ~ 2177356 (+) True G31117
TU38952 lncRNA upstream 181490 2097181 ~ 2099152 (+) True G31104
TU38724 lncRNA upstream 197373 2038647 ~ 2083269 (+) True G30943
TU39092 lncRNA downstream 112455 2404126 ~ 2409887 (+) True G31217
TU39148 lncRNA downstream 273838 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA downstream 273838 2565509 ~ 2566978 (+) False AMCG00019089
TU39274 lncRNA downstream 785245 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 848016 3139687 ~ 3165672 (+) True G31380
AMCG00019072 mRNA upstream 91983 2177927 ~ 2188659 (+) True AMCG00019072
AMCG00019068 mRNA upstream 105835 2170076 ~ 2174807 (+) True AMCG00019068
AMCG00019061 mRNA upstream 217886 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019062 mRNA upstream 246228 2031254 ~ 2034414 (+) True AMCG00019062
AMCG00019063 mRNA upstream 250066 2017146 ~ 2030576 (+) True AMCG00019063
AMCG00019076 mRNA downstream 73935 2365606 ~ 2369242 (+) True AMCG00019076
AMCG00019081 mRNA downstream 84324 2375995 ~ 2378374 (+) True AMCG00019081
AMCG00019082 mRNA downstream 100036 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019083 mRNA downstream 195671 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019086 mRNA downstream 199827 2491498 ~ 2501639 (+) True AMCG00019086
TU38962 other upstream 133079 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 133079 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 409263 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1026907 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1043005 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 802807 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 912116 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 912116 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 5128830 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 6053784 8345455 ~ 8384592 (+) False G32130

Expression Profile