RNA id: AMCG00019076


Basic Information

Item Value
RNA id AMCG00019076
length 1338
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00019076
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2365606 ~ 2369242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTCCGAAGTCACGAGGGATTCTCAGGATTCCCAGGGTTCCGAGGGTTCCCAGGATTCCCAGGGTTCTCAAGGGTCCACGGGTTCCAAGAGCTCGGCAGTGCAGTGCCCTGAACACCCACAGGAAGCCATCCTGTACTGTCTTAACTGCAGGCGCTACCTGTGCCCTCACTCTGAGCACGTAGAGCCCAGTTACACAAGAGTTGTTGAGCGTGTTGAGGAGGAGATAGAAAAGAAGGCCAAGCTGCTGAAGTCCACCCTGAGGAAACTGGGGCAGATGGAGGTGGGGGTGTCCAGGGCGATGAATGATTTGGAGACGAAGGTGagaacagctcaggagaatgTGGCCAAGAGGTACAAGGAGCTGAGGACACTGGTGGACACGAACGAGAAGCACGCCTTCGGTCTGATCGAGGCCCAGCACCAAGCCACCATGCAACAGATGCGCCAGCTGATTGATGAGGGAGAGGAGTTTCGCCCCAGTGCCACGAGTGTTCTGGAGATCACCGAGCAGATGTTACAGAAGGACAGTAAAGCCAAACTGATGGAACTGCTTGAATTAAAAGACCGAATGGAGACACTGGAAATCAAGGCGGAGCGGCTGGGGAGGATGGTACGTTGTGACACAGCGCGTTTGGACTGTCTGGAAAGCTCCCTGGAGCAGATTGTGAAGAACACCCAGAAGTTCCTGCCTCGGCCTTGGGAGTATGCCAAGAACATCACATTCAACAAGGACAGCGCCCACGAGAACCTGAGGGTCACGGCAGACAAAACCCAGCTCCAGTACGCCTCCTCCCCGAAGAGAGTCAAGGAGACGCAGAAGCAGTCAGAGACCATCCTGGCCTCTGAGTCCTTCGACTGCGGGAAGCACTACTGGGAGGTGGATGTGAGAGACCGGGAGAGCTGGAGTGTGGGCGTGGCGTACGGCAGCAAGACGCGCAAATGCCATGACATGGCGCTGGGCATAGACAGGAAGTCCTGGGTGCTGCAGAAGAGTGACGGGGACTTCATGTCAATGCACAATGGGGAGGGCATCCTGCTGCGGGAGAGGTGCGAGCGCCTGGGCATCTTCCTGGATTGCGACAAGGGCCTCCTGACCTTCTATAGTGTGGACAAGGGCTGCTCCCTTTACTGCTTCAGAGAAAAGTTCAAAAAGCCACTGGTCCCTGCCTTCAGCATCAGCTATGAGAAGGACAGCAACTGGCCCCTGACCCTCTGTACCCTTGTCCCCAAGAATGCTCAGGCAGCGGCTAACTCTGACCAAGACAGCACCCAGAGCCCCGACTCCGACGCCGTGGGTGTGGTGGACACAGTGGAGATAGAGTCTCGCTTATAG

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38999 lncRNA upstream 156417 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 173398 2191421 ~ 2192208 (+) True G31143
TU38970 lncRNA upstream 188250 2177148 ~ 2177356 (+) True G31117
TU38952 lncRNA upstream 266454 2097181 ~ 2099152 (+) True G31104
TU38724 lncRNA upstream 282337 2038647 ~ 2083269 (+) True G30943
TU39092 lncRNA downstream 34884 2404126 ~ 2409887 (+) True G31217
TU39148 lncRNA downstream 196267 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA downstream 196267 2565509 ~ 2566978 (+) False AMCG00019089
TU39274 lncRNA downstream 707674 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 770445 3139687 ~ 3165672 (+) True G31380
AMCG00019075 mRNA upstream 73935 2280642 ~ 2291671 (+) True AMCG00019075
AMCG00019072 mRNA upstream 176947 2177927 ~ 2188659 (+) True AMCG00019072
AMCG00019068 mRNA upstream 190799 2170076 ~ 2174807 (+) True AMCG00019068
AMCG00019061 mRNA upstream 302850 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019062 mRNA upstream 331192 2031254 ~ 2034414 (+) True AMCG00019062
AMCG00019081 mRNA downstream 6753 2375995 ~ 2378374 (+) True AMCG00019081
AMCG00019082 mRNA downstream 22465 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019083 mRNA downstream 118100 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019086 mRNA downstream 122256 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019089 mRNA downstream 150862 2520104 ~ 2618052 (+) True AMCG00019089
TU38962 other upstream 218043 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 218043 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 494227 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1111871 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1127969 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 725236 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 834545 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 834545 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 5051259 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5976213 8345455 ~ 8384592 (+) False G32130

Expression Profile