RNA id: AMCG00019080


Basic Information

Item Value
RNA id AMCG00019080
length 696
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00019080
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2303870 ~ 2312400 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCTGCCAGCCGCCCCCCCCAGCTACGCCGAGGCCACGGCAGGGGACAAGGAGCCGGGGTTTCGGGCCCCTCCCTACACCACCCAGCCACCCCTGCTTCCACCCCCCACCGTGCCCATCCACCCCAGCTGGGCCTACGTGCACCCCAGCCCCAgcCCTGGCTACACTAACCCATACGCTTCAGACATGTCCTCTCCGTTCTCAGACCCCAGCACCAGTGGGAGCTGCGATGGCCTCAGCGGGGAGGGCTGGGAGGACAAGAACATCCGCCGCATGTTCATCCGCAAGGTCTTCACCATTCTGATGGTCCAGCTCATGGTGACCTTTGGCATTGTGGCTCTGTTCACGTTCTGCGAACAAGTCCGGCAGTTTGTACAGTACAACCGCATCCTGTATCTCGCCTCATAcatcGCCTTCATGGGGACATACCTCGTGCTGGTGTGCAGCACGAGCGCCAGCTACCACAACACTAAAGTGGTGATGCTGTGCATTGGCATCACTGCCATGGTGTGCCTGGCCGTCACTCTCTTCTGCTTCCAGACCAAGTTCCTGGCCTTCGACGTGCAGCTGCTGATGGGAAACCGGCGCTACTCCCTGAGCCCCGAGGAGCACGTGTTCGGAGCGCTGTGCCTCTACATGGACATCGTCTACATCTTCTTCTTCCTGCTGCAGCTGTTCGGGAGTCGCGAGTGA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38995 lncRNA downstream 126904 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 241909 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 370456 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 407438 1885673 ~ 1896432 (-) False AMCG00019059
TU39093 lncRNA upstream 92014 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 162284 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 167538 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 181437 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 182316 2494716 ~ 2496567 (-) True G31245
AMCG00019078 mRNA downstream 5202 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019073 mRNA downstream 69353 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019074 mRNA downstream 100018 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019071 mRNA downstream 161917 2140521 ~ 2141953 (-) True AMCG00019071
AMCG00019069 mRNA downstream 205061 2096984 ~ 2098809 (-) True AMCG00019069
AMCG00019079 mRNA upstream 30198 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019077 mRNA upstream 68137 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019084 mRNA upstream 97540 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019085 mRNA upstream 159064 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019087 mRNA upstream 208513 2520913 ~ 2525129 (-) True AMCG00019087
TU38988 other downstream 125220 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 220599 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 220599 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 593327 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 980274 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2620438 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11349716 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12179491 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12179491 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12639442 14951842 ~ 14991996 (-) True G33259

Expression Profile