RNA id: AMCG00019081


Basic Information

Item Value
RNA id AMCG00019081
length 510
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00019081
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2375995 ~ 2378374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAGGAAGCATTCTCACGTCAAGATTGGCAGATACCATCAGCATTTAACAGAGCAGCTGGAGCTCGACCTGTCTCCTCTGGAGTACATGATGAAGTGCTACCCGGACATCAAGGAGAAAGAGGAGATGAGGAAGATCATCGGTCGCTACGGGCTCACTGGGAAACAGCAGGCAAGTGTCCCGTGGCAGAGACCAGGCCGAAACCTCTCGGACGGGCAGAAGTGTCGGGTTTGCTTTGCCTGGCTGGCCTGGCAGAACGCCCACATGCTTTTCCTGGACGAGCCCACCAATCACTTGGACATTGAGACGATTGACGCACTGGCGGACGCCATCAACGAGTACGAGGGGGGCATGATGCTGGTCAGCCACGACTTCAGGTTGATTCAGCAGGTGGCTCAGGAAATCTGGGTATGTGAGAAGCAAACCATCACAAAGTGGAACAGGGACATCTTGGCGTACAAAGAGCACTTGAAATGCAAAATCGACAAGCAGGCGCACGACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38999 lncRNA upstream 166806 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 183787 2191421 ~ 2192208 (+) True G31143
TU38970 lncRNA upstream 198639 2177148 ~ 2177356 (+) True G31117
TU38952 lncRNA upstream 276843 2097181 ~ 2099152 (+) True G31104
TU38724 lncRNA upstream 292726 2038647 ~ 2083269 (+) True G30943
TU39092 lncRNA downstream 25752 2404126 ~ 2409887 (+) True G31217
TU39148 lncRNA downstream 187135 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA downstream 187135 2565509 ~ 2566978 (+) False AMCG00019089
TU39274 lncRNA downstream 698542 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 761313 3139687 ~ 3165672 (+) True G31380
AMCG00019076 mRNA upstream 6753 2365606 ~ 2369242 (+) True AMCG00019076
AMCG00019075 mRNA upstream 84324 2280642 ~ 2291671 (+) True AMCG00019075
AMCG00019072 mRNA upstream 187336 2177927 ~ 2188659 (+) True AMCG00019072
AMCG00019068 mRNA upstream 201188 2170076 ~ 2174807 (+) True AMCG00019068
AMCG00019061 mRNA upstream 313239 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019082 mRNA downstream 13333 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019083 mRNA downstream 108968 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019086 mRNA downstream 113124 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019089 mRNA downstream 141730 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019090 mRNA downstream 240861 2619235 ~ 2636403 (+) True AMCG00019090
TU38962 other upstream 228432 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 228432 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 504616 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1122260 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1138358 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 716104 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 825413 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 825413 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 5042127 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5967081 8345455 ~ 8384592 (+) False G32130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068035 False 3025 mRNA 0.45 15 NC_007118.7 41403690 ~ 41420226 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_12639230_12645878.mRNA True 1982 mRNA 0.47 13 CI01000026 12638945 ~ 12645878 (-)