RNA id: AMCG00019088


Basic Information

Item Value
RNA id AMCG00019088
length 1335
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00019088
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2658553 ~ 2665864 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGATTAACCCCTGAGCCGCGGATCCCGCACAGCGACACTCAGCACCGGCGCAGACGGGGGGGCGGGATACCACGGCCGTACAGGAAATAAGCCGCTTTTACTTTAAACTCTCTCCTATGCCCAGTGCGTGTTTGTTGGTTTCATACCAGTAAACCCACAATCCTTTCTTGTCGTTTCTGCATCGCGGTCCGCACCACGGCAGCGTTACCCGGCGGGCGCTCGCCTCTCTGAGTGAAGCCACCCGGGGCACGCTGCTCAGGAAAGTCCCCGGATTGGACAGGCCGCGCAGCGAAACGCACATGTGGCACAAGGGCTCGTTTTCATAACAACTTTGActcagttttgttatttgtttaccGGTGAGCAAAACATGTTCGGCTCTTCGCGGTCGGGCGGCGTGAGGGGCGGCCAGGACCAGTTCAACTGGGATGACGTGAAGGGCGACAAGCACCGAGAAAACTACCTGGGGGATGCCGCCCGCTGCTGCGCTGCGCCTGAACCCGGGGCACCAGGCTGCCAGTTACAGGCAAAGGGCCGCGACCTGAGCTGGTACGCCAAGGATAAGAAGAGCGGAGCGGCGCAGTCGCGGGAGGAGGAGCTGGCGGCCGTGCGGCAGGCGGAGCAGGAGGCTCTGATGTCGGCCCTGGGCTACAAGAATGTGAAAAGACAACCTACCGGCCTTACCAAAGAGGACCTGGCTGACGTTTGCCGCAGGGAGGGGGCTGAGCGAGACGTTCGGGACGTGGACAGGGTCTCTGGACTGGGGAGCTCCAGCTCCGGTGCCAGTAAAGTCATGCTGTCCAAACAAGACAAGGAAGCTGCAAAGATGGGCCTAGCGGTTTTCACACATCACAAAGTGCAAGGCCAGCAAGAGGCCTCCGCCCAcaagggggagacagagagcagagaggacAACACGCAGAGCCAGAGGACGGagagcaaaaagaaaatgaaaaaggaaaagaagagcaaaaaggagaaaaagaagaagaaagataaaaagaagACGAAAAAACACCACAAGAGACGGTCGTCTTCCTCGGAGTCGGAATCGGAGGATGACGGCAGAAGGAGCAGAGAGGCTGCTCATCCATCATGCGGGCGTCAGAGCGGTGCCGGCCGCCGTGACAGCTATTCTTCGGGGGAGGCGGGGGCCGAGCGGCACGGCCCCCCCCGCGGCAGGCAGCAGCGCCACGACAGGGACTCCTCCTTgggctgcccccccccccaccaccaccaccaccaccaccaccaccgcgACAGCCGGCATCCAGCCCGGTCCCCTCCCGCACACGGCCACAAGCGCCGCCACGACACCGACTCGGACGATtga

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39148 lncRNA upstream 91575 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 91575 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 248666 2404126 ~ 2409887 (+) True G31217
TU38999 lncRNA upstream 449364 2188968 ~ 2209189 (+) True G31141
TU39274 lncRNA downstream 411052 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 473823 3139687 ~ 3165672 (+) True G31380
TU39362 lncRNA downstream 678891 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 687476 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 1198325 3864189 ~ 3864604 (+) True G31461
AMCG00019090 mRNA upstream 22150 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019089 mRNA upstream 40501 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019086 mRNA upstream 156914 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019083 mRNA upstream 169565 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019082 mRNA upstream 256424 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019095 mRNA downstream 179516 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019096 mRNA downstream 428588 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019100 mRNA downstream 524748 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019101 mRNA downstream 591797 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019099 mRNA downstream 616296 3282160 ~ 3285119 (+) True AMCG00019099
TU38962 other upstream 510990 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 510990 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 787174 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1404818 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1420916 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 428614 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 537923 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 537923 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 4754637 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5679591 8345455 ~ 8384592 (+) False G32130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030433 True 2859 mRNA 0.40 8 NC_007113.7 3044992 ~ 3062793 (+)