RNA id: AMCG00019090


Basic Information

Item Value
RNA id AMCG00019090
length 5509
RNA type mRNA
GC content 0.58
exon number 27
gene id AMCG00019090
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2619235 ~ 2636403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGATTCTGAGAGCTGCAGCACCCCCGACCGAGATCTGGGGCCAGAGGGGGTTTCCAGTGTGCCGGTCAAGAAATGGTATgagatcgagttcagcccgaCCACCTTCCGCAAGAGGAGCTTCACAACAGAAGCATTTGATGTTCCTCCGTGTAGAAGTGAGTACAGGGTAGCAGAGCTCGTCCCAGATGTGCGAGAGGGGGTGTCCTGGGACTTCAGGAGAGAGGTGGAAGTGGAAACCCGGGAGCAGTCCTACTTCTATGTCACTGGAGAGGAGGACACAGAAGGCCCTCCCTACATTCAGGAGACCGTGGAAGACCTCCAGGTCCAGATGGGTGCAGCAGCCACCTTCAGCACGCTCATCACCGGACGCCCTGCCCCAGCCGTCTCCTGGTACAAGGACGGAGAGCTGCTGTCAGCCAGTGAGAGGATCGTCCTGGAGCAGCAGGGAGCCCGGTTCTGCCTCACAGTGGTCCAGGCAGAGACGAGGGACGGCGGCATCTATACCTGCACGGCCAGGAATGCCTGGGGGGAGGCATCCTGCAAGGCTGAGCTCGCCATGGAGAAAGGAGCTGAGGATGATGACCAGGGCCGTGAGAGAGCGCTGGGGAGGAGCGGGCGGCTGCACTCGCTGTACGAGGTCCACGAGGAGATTGGGAGGGGCTGCTTTAGCTACGTGAAGCGAGTGACCCACAAAGGGAGCGGGGAGGCCGCCGCCGCCAAGTTCATCCCCCTGCGGAGGGGCACCAAGACCCAGGCCTTCCAGGAGAGGGCCCTGCTGTCCCAGCTCAGCCACCACAGAGTGGTCTGTCTGCTGGGGGCCTTCTACACGCGGAGGACCCTTGTCCTGGTCACTGATCTATGCTCCAGCCAAGGGCTTCTCGAGCATCTACTGTCACAGGGATCTGTCCCAGAGAGTGAGGTTCGGATGTACATTAAACAAATCTTAGAAGGCCTTGATTATATCCACGGGAGGAACATTCTGCACCTGGACATCAAGCCAGCCAACATCCTCATGGCCCTGCCCGAGAGAGATGGGGTCAAGATCTGTGATTTCGGTTTTGCTCAAGAAATCGACGTGGCCAAACCTCAGTACAGCAGGTTTGGGACCCCCGAGTTCGTGGCCCCCGAGGTCGTGTGCCAAGGCCTGGTTTCCAAGGCAACGGACATCTGGTCCCTTGGTGTCTTGTCTTTCCTGTGTCTGACAGGCGGCTGTCCCTTCTCTGGGGAGAACGACCGTGCCACCTTGCTGAGTGTCCAGGGGGGCCGTGTGGCCTGGGACGCCCCTGACGTCACCTGCAGAAGCGGGGAGTCGCGGGACTTCCTCCAGAGCATCATACAGCTGTCTGCAGAGAAGCGTCCGACTGCTTCCGAGTGCTTGGGGCATAACTGGTTTCAGcTGGATCTCCCAGATGctgaattaatcaatacaaagaAGTTGAAATTCTTTGTATCCAGGAGCAAATGGCAGCGCTCGCTCATGTGCTATGGATCTGTGCTGGCGATGAGGTCCATCGCCGAGCTCCTGGCTGGTGTTCCCAAGGACACCTCTCTGACCATCACCCGGGACCAGCAGGAGCACAGCAGCTCCTCGCCCAGCAGCGCATCCTCTTCTGATTACGAAGACGTCTCCCAGCAAGGAGAGACGCTCTCCTTGGGGGGCCCCGAAGCCCTGGCTGCAACTCGGCAACTGGGCCCTGTGTGGGACTGGCAGGAGAAGGGCACACAAGAAAGTGGAGAAGGGGTACGAGTGGATGCACGTGCAGAGCTTTCCACATCCAGCGCCTCCGCAGGGGTTCTGGGCAAAGGACCAGAGAAGGAGCGTTCTGAGTGGGTCCCGCCGAGACTGGCAGCAGCCGAGCTGGGCAGCATTAGCAGTGAGTTCCGGCTCACGGTTTGTAAAGCGGAGGTGGCAGATACGCCAGACTCCTGGGTGAAGTCAACGGAGACCCCTGGCCGACTGAGTCGTGAGGGCTCTGCAGACAGCTCTGTGTCCTTGTGCGTCTCAGAGGATGAGAGCACCGGCTCGTCCAGCGGGCGCATCCCTCGTGAGAGTGTCATCAAGAGCACGTTCTACAGCAGCTCCTCCGAACTGTCCCCTCTGTCTGCCCGACGTCTCCTGCTACAGGGGAAGAAATTCATGAAGAGGCACGAGAGGACGAGAAAGCACCTGCTGACATCTGGGCTCTCCAGCAGACTGAGAGAGCCCCTCCTGGAACATGCGGAGGACAACCAGAATGAGACGGACGACAGCAGGAACCAGGGGAGTGACCAGCTGGTTATGGCTAAGTCAAGTTCTTTTGATAGTGGAGTCAGAGTCTCCTCTTACGATGTAGCTAAGAAAAGACGGAGCAGGTCCTTGGACGAATACAAGACGAGAACACCAACACCGTCCGATTTGATAGAAGCGGGAGAAGATATTGAAGGACCTGAAGATTTTAGTTCCAAGGATGTTTTGGAAGTTGAAATGCAGATTAAACCTGTAGATATTCTACCTGAAGGAGTAGCAGGGACCACTCAGGAAGAAACAGTAGATGAAGAGGCAGAGCTGGCAGAGGTGGCCTCACTTGAAGTGCTAACCCGAGGGGAAGAGAGAGCGCAACGTTCAGAGGTCACCCCTGAGAAGACCGCAGAGGAAGAGACTTCAGATGAAAGCAAGATGGAAGCTGCCATTCTAGAGTGCATCCTGAGTGAAATGGTTTGCCTCTCTGAAGAAATTAATGTTATCACTGCTTCCAAATCGGCTCCAGAAAGACTTGATATTGCAGGAGCCTCCCCCACAGCAGAGACTGCGATACCTGAGGAATGTTCTCCAACGGTTAGTGATTCACAGTTGTTTGTAGACGAGCCCTTAGAGCTGAAGCCCATATTTGTGGAGTCCACCACACCAATGTCTGCCGTCCAGGAGGTTTCAGAGTTACTAACTTCACAGTATGGTCTTTCGCAGTTTGAGAGACCCCAGAGCTTTCACCTGTCTTTCAAGGCTCTGGAAAGATTagaactggaaaacaaaacccatttcCCAAAGCTGCATATAACAAGATCTGAAAGTGGGATCAGAAAATACAGTGATCCTGCTCTCCCGCCTCTGGGTGCAGAACCAGTGGAAAGTCGTTCTCACAGCGCCACGTGTGAACCTTTCACTTCCGCAGAGCCGTGCGGCTTTGAATTGGCTTCACAGTATTCTTTGACTGAACTGGAGGCTCTGGCTGGTCCAGAAGAGTCTTACTACCACAAGGCAGAGTCACCCCAAGAGCTCTTTCTAGGCCACCGCCCTGAGGAAGAGTATGACCGCCTCGATGTGCACATGCCGGAGGACGCGTCAGCCCAGGCTTCCCCGTATGTTTACCTGGAGGCTTCAGAGGCGGAACTGGAGCCAGAACTTCTGGACCTCCTGGAGGAAGTGCACATGTATGAGAACCTTCAGTTGGCGCAGGCTGAATGGTCTGAAAGCGACATCAGAATCCCGGGTGAGGACACTCCCTTCCCAGTGAAGTCTGCGTCTTCAGTGGAAGTTTCTCGGGGAGAACCACACGAATCCTTCAGGGAGCGAGTGCACCGACCTGCCTCAGCCCCGGAGTCCAAACGCCAGCCCAATAAATCGGGAAAATATGGCCTGTTAAGATTCTTCCGAAAACATGCGTCGACGGACCAACCGTCCACGTCGGCCGTGAAGGCACCGCAGAAGGAAACTCCAGAGGAGAAGTGGGGCGACTCGGCAGCACAGCATCAGCAGCACCAAAGAGCGCCAGATTCAAGCTTAACGAAGAAGGTGAAGGCCTCGGTTTCCAGCATCTCCAAGGCTGTCTGGGGGAGGCAGGCCAGCgagaaagagaagaaggaaGGAGAGACAGCTGCAGGGGATCAGTCCAGTCCCGAGTCCCCGACAGAGTCGAGTTGTGTAACCGCGGGATCTCTGAAGAAGAAGAGTGGTCTGTTCTCCTTCAAACTGCCCAGCTTCAAGAGGAGCAAAGAACCCGTGTTCTTGGAGGAGCTCCCAGACCAGGCGGTGTCCCTAGGCCAGTCGGTCTTGCTGTCCTGTCGGCTCGCGGGACACCCACCCCCTGACGTGCGCTGGTATAAAGaGGGCCGTCAGATCCAGAGCAATGGCCGTATCTGTATGTCGGTGAAGGACAGGGAATCGCACTCTCTCGTCATCAGCTCGGCTCGGGAGGAGGACCTGGGGAGCTACCGCTGCGTGGCCAGCAACGCCCTGGGCCAGGCCTCCAGCTCCTGCACGCTCATCGTGTCGGATCTGCCCACCTGCCCTGCCAGCCCAGAGCCCACTCAGGTGGACGGTAATGGGGTGCTGCTCACATGGAAGCCAGTCGAGTCCATTCAGCCGCTCACCTACAGCATCCAATACAGCATAGACGGAGAGGAGTGGAGTTTGCTGGCGGAAGGGGTGACTGACAGCTGCTACACCGTCAGTGGCCTGCCCAAGGGCTCAGTGTGTGTCTTCAGGGTGGCCTGCGTCAACGGAGCGGGCATGGGACCCTATAGTCACCCCTCCACTGCCACCACCATCGGAGCAGAGCAAGAAGACTCACTCATTCCCCTCATCCATTCTGTTCTCCCCGGGGCGGAAGGGGGCGAAGTCCCAGCACAGTCTCCGTTCCCCTTCTTTCCGATGCACAAGAGCTATACGTTTCTCTCTGAGATCAACAGGGGACGCTTCGGCATCGTCAAACAGTGCCGGGAGGACGTCAGCGGGAAGATGTTCGCTGCCAAGATCATCCCATACAAGGCGGACAAGCGCCAGGGGGTGCTGAGGGAATACCAGGTGCTGAAGAGGCTGCGGCACACCCACCTGGTGCAGCTCCACGCCGCTTTCATCACCCCGCGCTTCCTGGTGCTCGTGGAGGAGCTGGACTCTTACTCGGAGCTGGAGGTGCGCGAGTTCCTGCAGCAGATCCTCAGCGCGGCCGAGTACCTGCACTGCCGCCGGGTCCTGCACCTGGACCTCAAGCCCGACAACATGCTGGTCACCGAGTGCAGCCTGCTCAAGGTGGTGGACTTTGGCTCTGCGCAGACGTTCACGCCTGGGGTGGCCCTCGTGGTGGAGCGGCTCAGGGACCTGACGGAGAACAAAGCCCCGGAGATCCTGGAAGGGCAAGGCGTAGGACCGGAGACAGACGTGTGGAGCATCGGGGGGGTGGCCTTCACCATGCTGAGCGCCGATAACCCCTTCTACTCAGACATGCACTGCGAGAGGGACAGGAACATCAGGAAAGGGAAGATCCAGTTTGGCCGGTGCTACCCTGGCCTCTCAGAGGGTGCGCTCCACTTCGTGAAACAGACTCTGAACCACAAGCCCTGGGTGAGGCCATCAGCCGCCGAGTGCCTTCGCTTACCGTGGATACAGGGCGTCCCCGCCTCTAAGCACCGGCACTCCGTGGTCTATTTCTCCACCGACAAGCTGCAGGGCTACCTGCAGGGCTACGTCCAGGAGCGGGAGAGGAAACGGGCACACCTCCGCACCAAGCTAGAGGTGCCCGTCTTCTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39148 lncRNA upstream 52257 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 52257 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 209348 2404126 ~ 2409887 (+) True G31217
TU38999 lncRNA upstream 410046 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 427027 2191421 ~ 2192208 (+) True G31143
TU39274 lncRNA downstream 440513 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 503284 3139687 ~ 3165672 (+) True G31380
TU39362 lncRNA downstream 708352 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 716937 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 1227786 3864189 ~ 3864604 (+) True G31461
AMCG00019089 mRNA upstream 1183 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019086 mRNA upstream 117596 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019083 mRNA upstream 130247 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019082 mRNA upstream 217106 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019081 mRNA upstream 240861 2375995 ~ 2378374 (+) True AMCG00019081
AMCG00019088 mRNA downstream 22150 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019095 mRNA downstream 208977 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019096 mRNA downstream 458049 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019100 mRNA downstream 554209 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019101 mRNA downstream 621258 3257661 ~ 3275357 (+) True AMCG00019101
TU38962 other upstream 471672 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 471672 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 747856 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1365500 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1381598 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 458075 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 567384 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 567384 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 4784098 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5709052 8345455 ~ 8384592 (+) False G32130

Expression Profile