RNA id: AMCG00019096


Basic Information

Item Value
RNA id AMCG00019096
length 2705
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00019096
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3094452 ~ 3100171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGCAGTTCCGCGTTAGCCAGAGTCTCGTAGATATCTAATGAATTAGAGGTTTAAATGAAGATAACACAACACACTAGTCCGGTACAAGCCTGCGTGGTGTCTGTATGTCAGCTGCTCATGATAATAGTAGATCAATtgatagatttaaaaaaaacgaaacgATTTCAGTAACTTTATATGGTAAAGCAGCTGACACATACGaggttatttatatttataaacacgTGGATGTCATCAGCAGGGTGCAGATGCAGTTTCCTAGTCAAtatgtttctgttattgtttaatacaaacacaGATCAACTGTAAGCGGGTGGCACTCATGCAGTAAAAGGCGCTGCATTGTGCATTATGATCTTGAGCACTTTATGACATTTGAGTTCACTTGCATGTATTCGCATCGTGTCCAGCGCTTGACTTGTTCAGATGAGCTTTTCACATCATAATGGACAAGGAGACATTTCTCGCGGTTTGCAGTGCAGTCCGGGTCCCCAGACCATCATACGACCAGGCCTGTGTTGCTGACTACATGGAGGCGGACGGTCTCAGCTACTCCAGCTTCTTCAGGAGATACCTGCTGCCAAACTGCCCGTGTGTGTTGGCGGGGAGCCTGACGCAGGAGTGGCCCTGCAGGAAGCTCTGGGTCACCGGGGAGGGGAAGCCTGACTTTCAGCGCCTGCTGCATGATTTTGGAGACGCACAGGTCCCAGTGGCAGACTGCAGTGTGAAGGAGTACAATGCCAATCCAAAGCAGATCCTCCCTTTTAGAGACTACATTGCCTATTGGAAAGAGTACATTCAGCTTGGACACTCATCTCCCAAGGGATGCTTGTATCTCAAGGACTGGCATATGCACAGGCAGTTTCCTGAGCACAGTGTTTACAGAACTCCTGTGTATTTCTCCTCTGATTGGTTGAATGAATACTGGGACAGCATTGAGGTCGATGACTATCGCTTTGTCTACATGGGACCTAAAGGCTCTTGGACTCCCTTCCACGCCGATGTCTTCCGCTCCTACAGCTGGTCAGCTAACGTCTGTGGGAGGAAGAAGTGGCTCCTCTACCCTCCAGGTCAGGAGGAATACCTCAAAGACTGCCACGGCAACCTCACTTTTGACGTCACCTCACCCGTCCTCCAGGACGAGAAGCTGTACCCCCAATACCACAAGGCCTGCCAGCCTCTGGAAGTCATCCAGGAAGCAGGCGAGGTCATCTTTGTGCCCAGTGGGTGGCATCACCAGGTCTATAACTTGGAGGACACCATCTCCATCAATCACAACTGGCTGAACGCCTGTAACCTGGACATCGTGTGGCAGTTCCTGCAAGGGGAGCTGTCGGCAGTGCAGAGCGAGATTGAGGAGTGGAGGAGCACCATGGAGAACTGGCACCAGCACTGCCAGGTGATCATGAAGTCATGCACTGGTATTGATTATGGGgaattttacacatttctgaaGATCATCGCTGAGAACCGTCTGTCAGTCCTGGGCATCCACGCAGACTGCACATCCTCTGGCTCCTGCAGGAGAACACCAGACACTGTGGCAGCTCTGGGTCCCCACCACGCGACCTTTGACCTGCAGAGAGTGGCACACATCTTAGAGTGCCTGCTCAGCGACCAGGACTTTCAGAGGCTGGACACCGATTCCCTGCCTTCGGAGCCAGCCAGCCTGCTGGGGCAGATCACAGAGGCCGTGGCGTTGGCACTGTGACGATACCGACTGCAATTTGGGAACCAAGATGCTGAAGTACTGATGATGGAGTACTTTGTGCCACACATTATATTCTTTTAATCTCTGCCTCTTGCAGTCCAGGACTATATCGCATGTAAAGCCTGCAGCAGACATCAGTCTTCAGGgtgatcttttttttcttgtcctggttttgatttttttctgtttatgcCAATGATTAGGCAAATGTGGACTGACCAAACTGTCcgtgctgttttatttatttttagaagggAGGATTGCAAATCCTTGGGTTTGTTCATCTTGTATGATTGCtcttgttatatataaatattcagcCTTGGTTTAATAAGTGCAGATTAAAGATATTACAAAACTTTACACTCGATACACAACTTAAATGTTATTCATGTGCAGGGGGTTTGATCAGAACTAACACACAATCGTGATTATGTGATGGCAATGCccccacacctctctctctgtagtgGACACATAGTCTCAAAACTAAACCTCTTTTTTGAGGATATTATGATGTTACTTCCATCAGTAacagaacaacaacataatGTGCCGTCCCCcctctaaaatattaaacaaacaacacacgATACGATGAATGAGGAAACTGAGACACAAGTAATGAAAGCTTTTTGGTGAGAGGTGCCTTTTAGACCTCGAACTTCAGAGTTTGTCATAATAAAAGTCAGACTTACTGTATGTAGAGAACATATATGGTACAAGAAACTAATTGTCAACTAATCTCTTCGGTATCCATAGAGACTGaatttctctcttttccttcCTGCTTTTTTTGCTGTTTGGTTTTTCTCTAGATTGATCTGAAATTGTAGCTGGAGGCACTTCAATTTCTTCATCATCTAATTTTGCTTTATACTACTATTCAACGAGCTTAGTAAATACACTGCGGATGAtcatatttgttattaaatataaaagtcaATAAAAAGCACTTAGGAACTGCTAGTTCATAAGTGGAAAACACTGAG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39274 lncRNA upstream 17296 3076916 ~ 3077156 (+) True G31351
TU39148 lncRNA upstream 527474 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 527474 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 684565 2404126 ~ 2409887 (+) True G31217
TU38999 lncRNA upstream 885263 2188968 ~ 2209189 (+) True G31141
TU39304 lncRNA downstream 39516 3139687 ~ 3165672 (+) True G31380
TU39362 lncRNA downstream 244584 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 253169 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 764018 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 1266786 4366957 ~ 4368203 (+) False AMCG00019111
AMCG00019095 mRNA upstream 244452 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019088 mRNA upstream 428588 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019090 mRNA upstream 458049 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019089 mRNA upstream 476400 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019086 mRNA upstream 592813 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019100 mRNA downstream 90441 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019101 mRNA downstream 157490 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019099 mRNA downstream 181989 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019104 mRNA downstream 531564 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019107 mRNA downstream 1148222 4248393 ~ 4249743 (+) True AMCG00019107
TU38962 other upstream 946889 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 946889 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 1223073 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1840717 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1856815 1233494 ~ 1237637 (+) True AMCG00019030
TU39314 other downstream 103616 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 103616 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 4320330 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5245284 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 5245284 8345455 ~ 8384592 (+) True G32130

Expression Profile