RNA id: AMCG00019100


Basic Information

Item Value
RNA id AMCG00019100
length 4250
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00019100
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3190612 ~ 3210890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGTATTACCTGAGCGCCGCTGCCTTCATGGTTTGAAACGGACACTTACTGGCGGATTTAGCGCGCAACTGGGAAGTTGTTTTGCActcatgctttgtttttgtctggTGACATTTTTATGATATGGGGTCATTAGTTAACAATTGTGCACACTAGTCTGTTGTGtaaattgcaattaaattaGTTTGCATGCTTTTACCTTGCACTGGACTGgattaaatgcaatattattttgcattttcgCATTTCAGTAATGGGCTTAAAGCGAAGCTGCATTCTTTAATTAAACAGCCGCTTGCTTATCAAGTCTgtgtaaaacaattattttattcacatgctttgaaataaaaccttttttattgtcttatttTCTCCCTTTGATGTCACAGTATTAATTAGGCGCCTTCGCTTGTAACATTGTTGCGTCTCAGAGGGCTTGAGTGCCGACGTTTATACACAAATGCACCCTGACGGGAGGCGGCTCCGCTTTCCCCGGCGATCCCGCAGAGCAGGGCCGCTGACACGGCCGGGGCATCTGAAATGGGCTGCTGCCCTGTCCGTGTCCCAGTCGCTCCCGCCCTCCAGTGTCCCGCACGGCCCAGCCAGCGGCCATTCGGAGAAGTGCGTCTGCCGGCCCGGGTCGCAGGCGGCGCACAGCTGTTACTGCCCCGCCGGACAGGCGCTGAGGGCAAACCAGTGCCGGTGTGTTCAGTCCGGACGGTGTGGGCGCACCTGTCTGTCTCTTGCAACACAACCCCAGTTTGGCGCCGCACACACCGGCGGTGGCGCAGTGATCCGAGGCGTCTCTGTAGGCCCAATGACCATGGAAACTGTGGTCGAGTCTAAACAGGATGGAAGTGTTGACGATTCTGTAGCTGATGGAGAAGCCATTCAAATGCAGAACCAGTCTACCCACTCTCCAGTCTCGAAACTTGCACAGGTAGCTGCAATAGCAGAGTCAGATGATGCAGAATCTACAGAAGgtgtcacagacacacagaaaaggagagaaatTCTCTCCAGGCGACCATCTTACAGAAAAATTCTTAATGAATTATCTTCTGATACACCGGCTGTGCCAAAGATCGAAGAAGAGAAGGCCGAGGAGGAGGGAAGCGCTTCCAGTGTTGCACCCATAAGCGTGCCCTCCATCTATCAGACCAGCACTGGCCAATACATTGCCATTTCCCAAGGTGGAGCAATCCAGATTGCCAGTCCGGGAGGTGATGGCATCCAGGGGCTACAGACGTTGACCATGACAAACTCGGGCACACCCCAGCCGGGGGCCACCATTGTGCAGTACACTGCGCAGTCCAGTGATGGCACCCAGCAGTTCTTTGTCCCAGGCAGCCAGGTGGTTGTCCAAGCCGCCACTGGTGACATGCCTACCTACCAGATCCGCACCCCGACATCGAGTTTGCCACAAGGGGTTGTGATGGCGGCGTCGCCCAGCTCCCTGCACAGCCCACAGCAGCTGGCCGAGGAAGCGACACGGAAGAGGGAACTCAGGCTCATGAAAAACAGGTACGGCCATTAACGCCTGCAGAAATCTTCTGGTAAAGTGAGACGAATCTCACAGCGTCTTCAATTGAACTTTTAATGAAAGTTCAGTTTACGGTCAGTACATTTCATCGGCATGACCACATACCCTgtcaattgaaaatgtatagaaCTCGTCTTTGGAAGACGTCTTATCCGTTTGTGAAAGTGAAGCTCTGAGAAGAAGCATACAAACAGAGAGGTTCATGGTCTCCACTATAGTATATGTTCATTAATCATGCGTCCTGTCCACCCTTTGCCTGCCATTCATGCCTTATTCTTGGACACTTCCTGTCATGCCTTTAACGTGCAATTCGTTCATGCTTTTGGATAATTGTTCCCACTTTGTCATATTGCATGGCTGCCTCTCTCCCTTGTTTAATGCTGCTGGAcctttgttgttgctgtatgCAGTGCCCTTCATGCGTTTGGTTTCTCCCCTTCCCTTACTTGTACACTTGCGCCTGCTGTAGTGTTTAGCGCATGTTGGTTCTTGGACTGTTGAAGCCTCTGACTCATTAGAAATTAATTCTGCAACTATACCTTCTTTGTAAATTATTGGTCTGTTTCAAATCAATGTCCCGCTGAAAGCCTTTATTGAGCAGTTTTCTACATTTCTGTGAATCGAAATGTTGGCATTTCATGAGATATTAAAAACTTGTCTTTAAGTGACTGTTTTTTCAGATTATACTTTCTACACTCTCTGGTCTCCGAGGGACTTGCTTAGTCTTGCATTTTGGATACTATACAATGGAGAGTAGGACATGAAGCTGCCAGCGTGGCTGGATGTGTGAATGGTCTTTTTATTCTGCTTCTTGATGCTTTGAAATCCATTTTTTTATGGGAGTTGTTTGTTGTGTTGGTTCCAGGGAGGCTGCTCGGGAATGCCgcagaaagaagaaagaatacGTCAAATGTCTTGAAAATCGTGTGGCGGTGcttgaaaatcaaaacaagactCTCATTGAGGAACTTAAAGCTCTCAAAGACCTGTATTGCCATAAAACAGAATAACTACCACCTTGGTCTGGGAACCAAAAGACTTATAATAAAGGCATGAGAGGGTTCATTTTACAGACTGCTGTAAAGATTTGGGGCGAAAACAAATCTTCGTGTTGTGCTCCAGCTCGGCTTTTGGCTTAATACTTTTAAGAACTTTGTGAATTCTGTCCCAGCTCTTGGAAAGCAATTATGTCCATGTCCATCGTGAGAATCATGTCCAGCACTTTCTTTCACAGAGTTATTTAGCATGTGAATATTGCGTGTTGCCCCTGTCGCTTCTGCTCTTGCAGGCAGGCTGCCAAAGCGTGCCGCCGTCGGAAGAAGACCTATGTAAGCTGTCTGGAGAGTCGTCTTGAGATACTTGAAGTCCAGAACAAGAAGTTGACCGCTGAGCTTCAAAACCTGAAGAACATTTATTGtggaaaattgtattaatgtatccAAAATGGAATACAAGTTCAAACACTCTTTTGTTAACTGTTTAAATCAGACCTGCTTGTTTTGCGATGCTTTTCtcaactgcattattattattattattattattattattgttattattacattccTCTGTGTGGTTTTCAACTCCTGTAGAATATAAGATGTAAAGAACTAGTAGCTATAACACAAGAATGCCCaagttaatgcatttaaatgtgtccCATTGTCAAACACCAttatctgttttatatatacctTTTCAATGGACATTCTACagaccttttattatttttcaaagcagcCAGAAAAGTTGAAGCCAGTTTGACACGTGCTAGTGTGAATCGAACCCCAGCTTTTCTTTACACCCCAGTGCATCTCCTTTTATGTAAATGGGAAAGATCTGTTCTCTACCCCCCCACAGGCCTGGGTAGAGCATTTCAGGTCAGTACGGGATCTGAACAGAGACAGGTAAATGAGTGTCTAAGTACTGGCCTGCGGTAGATTTAAGATAAATCTATTTTGTGTACGACCAGCCAATTATATGTACCTCTGAGAGGATTTTTCTATTAAAGTGTTATTGacaatttattaaatatttagtttatatattttttggggggagatAATgttatacacactcacacacatacacataaagtgtgtatttatatatatgtagctGTACCTATTTTTGCTGATATTTCATATTGATGTTTCAGTCAggtataatgtaaatgtttgcaGAGTGGACGTGTTGTGGAAGAAAAGCAAGATGGTTAACCTGACTCCAGCTTAGCGTGAGTGTACAGACGTTTTGCGCCCCAATTAGAggcatttatattataataatacagagaaatgcagaaatgttCTTTGCTGCCTGAATAATGGCTGGGTTTTGCAGCCTTGTGTATCACATTGCTCTCGGTATGTCtctttgatttatgtttttaaaactgcatttctaTTAGTCTGATAAATCTGTTATGAAAAATGTGCCATTTCAGAAACCACTAGCATACGCTGGGAagactgaaattaataaaacattgaataagCCTTTAGGATTTACATTTATTCACCTTTCAAAGCTGGAGTGCTTTCAGCTGTTATGTTCAGATGCGATCAACTGGGGAATTTCACCAAAACAGTACCTGACATATTAGGAAATGCATActagagaaattaaaaaatgcacatcttggtgtgtgtgagaaagGACTGAGTTTGTACATACACTACATCCTTAAACTCTTACATTACCAT

Function

GO: NA

KEGG:

id description
K09052 CREM; cAMP response element modulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39304 lncRNA upstream 24940 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 113456 3076916 ~ 3077156 (+) True G31351
TU39148 lncRNA upstream 623634 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 623634 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 780725 2404126 ~ 2409887 (+) True G31217
TU39362 lncRNA downstream 133865 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 142450 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 653299 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 1156067 4366957 ~ 4368203 (+) False AMCG00019111
TU39503 lncRNA downstream 1536658 4747548 ~ 4747749 (+) True G31566
AMCG00019096 mRNA upstream 90441 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019095 mRNA upstream 340612 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019088 mRNA upstream 524748 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019090 mRNA upstream 554209 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019089 mRNA upstream 572560 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019101 mRNA downstream 46771 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019099 mRNA downstream 71270 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019104 mRNA downstream 420845 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019107 mRNA downstream 1037503 4248393 ~ 4249743 (+) True AMCG00019107
AMCG00019106 mRNA downstream 1057361 4268251 ~ 4282752 (+) True AMCG00019106
TU39281 other upstream 94186 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 1043049 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 1043049 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 1319233 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1936877 1253366 ~ 1253735 (+) True G30877
TU40051 other downstream 4209611 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5134565 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 5134565 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 6050484 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 6118589 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile