RNA id: AMCG00019101


Basic Information

Item Value
RNA id AMCG00019101
length 1041
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00019101
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3257661 ~ 3275357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGATTCGATTCACATaagttttatttcatatttgccAACTGGATCACCCTACATTGTCACGGGACAAGACAAACTAGCCTTGTTCAAGCTTCATTTAAacctctccttttctttttacacagATTTAAACATGGAGTACAATCCTTCGGATCATCCACGAGCAAGCACGATATTCCTCAGCAAGTCGCAGACAGACGttgctGTTCCCAACAAAAAAGtgagggaaaaacgGAAGAGCCTCTACATTAATCATGTTGACACTGTTCTTCTGCAGCATCCGCCCGGGCAAATTAGAAGGAAGTACAGCTCCTGTTCCACTATTTTCTTAGATGACAGCACAGTTAGTCAACCCAACCTCAAGTATACCATTAAATGTGTAGCTCTTGCAATATATTACCACATAAAAAACAGAGACACCGATGGACGAATGTTGTTAGACATCTTTGATGAGAAACTCCATCCGCTTACGAAATCTGACGTGCCCTCAGACTATGACAAGCACGACCCGGAGCAGAAGCACATCTACCGCTTCGTTCGGACCCTCTTTAGTGCTGCGCAGTTGACTGCAGAATGTGCCATTGTAACGCTGGTATATCTTGAAAGACTCTTGACATATGCAGAGATTGACATCTGTCCCGCGAACTGGAAGCGAATTGTCCTGGGCGCCATCTTGCTAGCGTCTAAAGTGTGGGATGATCAGGCGGTCTGGAATGTGGACTACTGTCAGATCCTGAAGGACATCACAGTGGAAGACATGAATGAACTGGAGCGACAGTTTCTGGAGCTGCTGCAGTTCAATATTAACGTCCCCTCGAGTGTTTATGCAAAGTATTATTTTGACCTGCGTTCCCTTTCAGAGGCGAACAATTTGAGCTTCCCCTTGGAACCGCTCAGCAGGGACAAGGCACAGAAGCTGGAGGCTATCTCCCGGTTGTGTGATGACAAGTATAAGGACTTGAGGAAAGCGGCGAAGAAGCGCTCTGTAAGTGCGGACAATCTGACTGTGGTGAGGTGGTCTCCTGCCATCTTATCCTAA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39304 lncRNA upstream 91989 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 180505 3076916 ~ 3077156 (+) True G31351
TU39148 lncRNA upstream 690683 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 690683 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 847774 2404126 ~ 2409887 (+) True G31217
TU39362 lncRNA downstream 69398 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 77983 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 588832 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 1091600 4366957 ~ 4368203 (+) False AMCG00019111
TU39503 lncRNA downstream 1472191 4747548 ~ 4747749 (+) True G31566
AMCG00019100 mRNA upstream 46771 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019096 mRNA upstream 157490 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019095 mRNA upstream 407661 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019088 mRNA upstream 591797 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019090 mRNA upstream 621258 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019099 mRNA downstream 6803 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019104 mRNA downstream 356378 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019107 mRNA downstream 973036 4248393 ~ 4249743 (+) True AMCG00019107
AMCG00019106 mRNA downstream 992894 4268251 ~ 4282752 (+) True AMCG00019106
AMCG00019111 mRNA downstream 1044239 4319596 ~ 4367261 (+) True AMCG00019111
TU39314 other upstream 46978 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 46978 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 161235 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 1110098 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 1110098 2143921 ~ 2147563 (+) True G31110
TU40051 other downstream 4145144 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5070098 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 5070098 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 5986017 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 6054122 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile