RNA id: AMCG00019104


Basic Information

Item Value
RNA id AMCG00019104
length 828
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00019104
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3631735 ~ 3635688 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGAGCGGGACCCTTCACACAAACGCGCCAATCGGCAGGCCGGAGAGAGCGAGTGCAGGTCAGGAGACGCCGCTGATTGGCGGACGacatGCTTGGAGTTAGAAAGGTATCTTCAGAGCGAACCTTATGTCTCTGCCTCAGACATCAAATTTGACAGCCAGGAGGATTTGTGGAGTAAACTCATCTTGGCTTGTGGCGACAAGGGGGAGGCTGATCCAAAGATCGCTCGCATAAAAGAAGAGGACAATCAGGATAACCAAAATTTGGAGACCAACAGCTTGAACTCAGATGCCAGCAGTGAAGCCTCTGACAGCTCAGAGGAGCTCTCTCCTACTCTGAACTTTACCTCAAATCCTTTAAATGATGTTTTGGTCAATTCTGGACACTTGAGCTCTTCGGTTATTACCACGCCACCATCTTCTCCAGAGCTCAGCAAAGAGCCCATCATCCCACAGGTGTGGAGCGGGATACAAACTGAACTGCACTCCCCTGGGAAGGTCCGTGCTGGCAGTGTTGGAAAGACTACAGAAAAGACTAGCCCTGCAAATGGGGAGACTTCACCCGATGGCAGAAGACGGGTGCATAGGTGTCATTTCAATGGCTGCAGAAAGGTTTACACAAAAAGTTCTCACTTAAAAGCACATCAGCGCACTCATACAGGTGAAAAGCCGTACCGGTGTTCTTGGGAAGGTTGCGAGTGGCGCTTTGCAAGAAGCGATGAGTTAACCAGACACTTCAGAAAGCACACTGGTGCAAAGCCATTTAAATGCAGTCACTGTGACAGGTCTGACCACCTGGCTCTTCACATGAAGAGACACCTCTGA

Function

GO:

id name namespace
GO:0035265 organ growth biological_process
GO:0031016 pancreas development biological_process
GO:0048565 digestive tract development biological_process
GO:0021634 optic nerve formation biological_process
GO:0001889 liver development biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39364 lncRNA upstream 243050 3353340 ~ 3388685 (+) True G31432
TU39362 lncRNA upstream 286491 3344755 ~ 3345244 (+) True G31430
TU39304 lncRNA upstream 466063 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 554579 3076916 ~ 3077156 (+) True G31351
TU39148 lncRNA upstream 1064757 2565509 ~ 2566978 (+) False AMCG00019089
TU39393 lncRNA downstream 228501 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 731269 4366957 ~ 4368203 (+) False AMCG00019111
TU39503 lncRNA downstream 1111860 4747548 ~ 4747749 (+) True G31566
TU39572 lncRNA downstream 1337284 4972972 ~ 5030095 (+) True G31622
TU39620 lncRNA downstream 1458193 5093881 ~ 5127629 (+) True G31663
AMCG00019099 mRNA upstream 346616 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019101 mRNA upstream 356378 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019100 mRNA upstream 420845 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019096 mRNA upstream 531564 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019095 mRNA upstream 781735 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019107 mRNA downstream 612705 4248393 ~ 4249743 (+) True AMCG00019107
AMCG00019106 mRNA downstream 632563 4268251 ~ 4282752 (+) True AMCG00019106
AMCG00019111 mRNA downstream 683908 4319596 ~ 4367261 (+) True AMCG00019111
AMCG00019113 mRNA downstream 774295 4409983 ~ 4423443 (+) True AMCG00019113
AMCG00019114 mRNA downstream 795208 4430896 ~ 4433550 (+) True AMCG00019114
TU39314 other upstream 421052 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 421052 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 535309 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 1484172 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 3784813 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 4709767 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 4709767 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 5625686 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 5693791 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile