RNA id: AMCG00019107



Basic Information


Item Value
RNA id AMCG00019107
length 948
RNA type mRNA
GC content 0.71
exon number 2
gene id AMCG00019107
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4248393 ~ 4249743 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGAAGATGAAGCTGCCCATGAGAGCGGCGGAGGAAGGCGGAGACGACACGGCCGAGGACGAGCAGCCACAACCCGACCGCCACCCCCTCTTCCCCGGCTCGGACTGCCTGAGCAAGGAGGCGGTGTTCGAGTGGTTCGGCCTGTGCCTGAGCCCGGCCGAGCGCGTCGAGCTGATGTGCGGGCTGCTGCACATGTGCCAGCCGCTGGAGCTGCGCTTTCTGGGCTCCTGCCTGGAGGACCTGGCGCGGAAGGACTTCCACATCCTCCGGGACTCCGAGATCAGGGCGAACAGCCCGGCCGAGCTGGAGCTGCTGACGGACGTCGCCGACCCGGTGGTGCGGTCCAAGCTGCTGGTGTGCCTGTCGCTCCTGGGCTCGGAGAACAGGGAAGCCGCGGGGAGGCTCTTCGCCATCCTGAGGCGGGTGGACGCAGCCCTGTACTTCAAAAACTGCGGCTTCCCCGTCTCCGCGTACCCGGACCCCCGGCCCCTCCAAGTCCACCCTCCGTGTGAGGACGCAGAGGAGGCGGGCAGAGCGGGGCCGGGTTGCGGGCCGCCGTCGGAGGCAGGGGCCGGTCCTCTGGAGCAGCTGGCGCTGCTGTTCACCATGGCCTCCCTGCACCCGGCCTTCCCCTTCCACCAGAGAGAGACGGTCCGGGTCCAGCTGGAGAAAGTGGAGCCGGCGATCCAGGACGAGAGGCGGCGGTACCGACACGCCAGCAGCGCCCTGCACGGGTGCGGGGTGCGGGGTGCGGGGCTGTGGGAGCCGGTTCAGGGCGCACTGGAGGCGCTGCAGCGCTGGGTGGCCCGGCCTCGCTGCCCTTTGATTGACAGCTGGGCAGGGAAAGCGGGCGCTGTGACGTGTAATGTGTGCGCCGCCGCCGGGGGCCAGTGCTGCTCGGGGTCCGGGCGTGGGCGGCTGGGCCGGGGTGGGCCGCCTGTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39393 lncRNA upstream 383789 3864189 ~ 3864604 (+) True G31461
TU39364 lncRNA upstream 859708 3353340 ~ 3388685 (+) True G31432
TU39362 lncRNA upstream 903149 3344755 ~ 3345244 (+) True G31430
TU39304 lncRNA upstream 1082721 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 1171237 3076916 ~ 3077156 (+) True G31351
TU39435 lncRNA downstream 117214 4366957 ~ 4368203 (+) False AMCG00019111
TU39503 lncRNA downstream 497805 4747548 ~ 4747749 (+) True G31566
TU39572 lncRNA downstream 723229 4972972 ~ 5030095 (+) True G31622
TU39620 lncRNA downstream 844138 5093881 ~ 5127629 (+) True G31663
TU39654 lncRNA downstream 928191 5177934 ~ 5183039 (+) True G31690
AMCG00019104 mRNA upstream 612705 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019099 mRNA upstream 963274 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019101 mRNA upstream 973036 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019100 mRNA upstream 1037503 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019096 mRNA upstream 1148222 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019106 mRNA downstream 18508 4268251 ~ 4282752 (+) True AMCG00019106
AMCG00019111 mRNA downstream 69853 4319596 ~ 4367261 (+) True AMCG00019111
AMCG00019113 mRNA downstream 160240 4409983 ~ 4423443 (+) True AMCG00019113
AMCG00019114 mRNA downstream 181153 4430896 ~ 4433550 (+) True AMCG00019114
AMCG00019115 mRNA downstream 188689 4438432 ~ 4452436 (+) True AMCG00019115
TU39314 other upstream 1037710 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 1037710 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 1151967 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 2100830 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 3170758 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 4095712 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 4095712 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 5011631 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 5079736 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile