RNA id: AMCG00019108


Basic Information

Item Value
RNA id AMCG00019108
length 4093
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00019108
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4185740 ~ 4207481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGTGAGAGAGGAGGCCCTGGGGAACCCGGGCCAGACGGACAAGGAGGACCTCCGGGCTTCAGGGGCCTGCCGGGCCGGCCTGGACCTGTGGGAGCCAAAGGCGAGCGTGGCATCCCAGGTCTTAAAGGGACAACGGGACCCCAAGGACCCCAGGGCAATCAAGGCCCCGTCGGCCCACCTGGCATCGAAGGACTCGAGGGCCCGAAGggaGTTCCTGGGGAGCGCGGGATAGCGGGGGTTCCTGGGCTTCCAGGACAGAAAggaaTGCAAGGAGAGCAGGGGATTCAGGGGCTGCCTGGCCCGATGGGGAATCGTGGATTAAAAGGCCACAAGGGGGACACTGGTGAACCCggtgaaaaaggaaaacagGGTGATCAAGGCTCAATGGGAATCCCTGGGGCTCCTGGGATACAAGGTGATGCTGGGCTCAAAGGAAGCAAGGGAGAGAAAGGCACAGTTGGAGATTTGGGAATCCGAGGGCCTGATGGGAAAAAGGGAGACGTTGGGCCCGTCGGCGCTGTTGGGCCCCGTGGACCTTCAGGCGGGGATGGGTTACCGGGGCAGCCAGGAGTGCCTGGCTATCCAGGGAAGCCTGGCTCACCAGGTGTCCCAGGGCCCCCAGGTCCTCAGGGCCCCAGCGGCCCCCCTGGATACCCTGGCAGGGTGGGAAGGCAAGGATATCCAGGGCCACCTGGGCTGCAGGGATCTCAAGGAATTAAAGGTGACACTGGGCCAAGAGGCGACAAAGGCTCGAAAGGAGAAGGACACACTGGATTGCCCGGGCCAACTGGTTCACCAGGGCCCCACGGGACGCAAGGTAGGGACGGTGAGGGTCTCCCTGGGCCCCCCGGCGATCAAGGCAAAGCTGGGGCAGCTGGCATCCCTGGGAAACGGGGCCCACCCGGACACCCCGGCGTCTGTGACATGACGCTCTGCTACAACACCTTCGAGCTCAGACAGAACCGCTTCAGCAAAGGACCCAACTTCTAGAGCGTCTTCCTCAAAGGGGGAATATCCACAGAAACTTGGCCTggtataaaacaacaataaaacagtgtttAGTGCACTAGCAAAGCTGCAATCAATATCTCTAATCGGTTTAAGGGCTAgatgcaaataaaatgaaccACACAATGTAAATTGTTTGTAGTTACCCAGTGACCAAATGGATAGCTTGCATAGTATTCAATATATGGATCTTCATGGTGCACCGCCTTAGTTATGCTACCTCCATGTTTTACCCAAGGACTTAAGGAGTTCTGTGTACAACATCATCCCCATTGTACTTATCATAAAATACTTATCATACTGAGATTTAAGaggacatttgtttttcattagaaTTCTACTGTATTTGAcctcatttttatatatttatattatattatattatccaTTTAATTGAAAGCAGAAGAAACACAAGTTATCCTAATATTTCCAACTATCTGcttcaaaaacatgtttatcttCTCATTAATTGAGCCACAATTTATTAAGTCGACATACATCTTAGGATTTAATTGACAGTACTCCTTACAGAAGAAAAcctcttatttgtatttaaaacttcCCAATGGAACCATGCTTTTAGTATTCTACAATAGTTTGATTTTGCATCTCACTACTAATACGTTAATATGCATTAAGACTGTTGTTTGGTGTATTTCAATCTCAGGAAAGGAGCTGTACTTTGTTCTTGTGCCTAAAATTTGACATGTTATATGGTGGCATTTGGTTCAGTATTCAGAAAGCTTAAGTTCACCCATAATGCTTTTGTCAAAACTTTATATTGATGAGTATAGCTCAGATTGTTTATTACACTTCTGAAGACATGTAGTGACTTCTTTAACATGTCTAAACTTGTTGCTTTATAGATGCACAGAAATGACCAAAGCAAAGTATCCCCGTCTCATTCGGTAGGGACGGTGTaacctgggtgatgtgctgtgttgggtttgcccCAGACGTAACGCTTTGCTTTTAGACCAAATGGTAAAATGTTTGTATCATTGGACCACATAATCTTTGTAACATCTTTTCAGAGTTTCTCACATGTCTATCTGCAAATTCCAAttgaattttttgtttttgaaatggcttccttcttgccataCAGGCCAGATATGGGGAGAACGTCTGCTATTGatgacacatggacagtttctctcATCTCAGCCAGTTGTCTTTGGCCTCTTGGTtgcttctctgaccaatgctCAATGCCCTTCTTACCCTGCCGCTAAATTTGGGAGGTCAGCCTTCTTgaagcagattctgggtggtgtcgtataccttccacttcttaatgatcgacttgactgtgctccaagggatattcaatgcctttgaaatctttTGATACCCCTCCCCTGATCCGTGACCttccacaactttatcccagagttgttttgaaagctccttggacttcatggtcgtatctttgctttgaatacACTACCCAcctgtgggaccttacagagacaggtgtatttaatctgaaatcatgtcaACCACCATTATTTTTGATGTCATTGGACACAGATGGACTCCACTGAACAATtcgtgtgaattctgaaggcgattggttgcacctgagcatatttaggagtgtcatagcaaagggacTGAacacttttcaggtttttattttgaattggtTTGGTTTTTCACTCATTTATCCCCACATTGCAAGTGTGTAGTAGGTTGTGTAGATCAGAAGAAACAAATCCCATTTATATGGTTGTAACAcaatcaaatggaaaacaaagccCTAGGGGcatgaatacttcctatagggACTGTATATGCTCTTAAATACTCACTATTCTAATCAAGTGCCCTGATAATTTGCTAGATGGGCGCTCTTTACCCTGAAGGGAAATTGAGAcagtatatttgaaatattacaagTCACATAGAGGGATAAATAGAAAAACTACCTAGATTTGTTAACATAATGCATCATACTGTAGTGCGATGTTTTAAGAAGTCATCCTATTTTAATCTAATGGAGGAATATTCAGCAAATGCACTTCATCTACAAAGGCTGATGAGCTTTGGCTCAAAAGTGTTGAGTGGGTCAGACGGCCTTCTGTTAGCAGTTCACTTGAGTCAGTTCTTCACTGGAATAGTACTAATTGAATTGCTGTGCTTTGATGTACCTGCCTTAAACACCATCCAAATTCGTAGAACTATAATgactttaatattttcacttgtTACAGGAGCCCTGGTTAACACAGTTGATTTTTAACTGTTTGGCAGCTCATGTTATggcattttgttcatttatttatttttaaaaggcatttctTAAAATGATCGATTGATGTATTAATCCTTACAATATATGTTCctttgtgaattatattaattttcctATTAACAGGCTTAAAAATCAGCAAGCAAATAACTGTTCTAAACTTTTATATACTACACTACGTAGGGAAGAAACTTTTTCCAGCCTGCCTCGCTACTCTGTAATTAGGTATGCCAAGCAGGAGCCTTCATCCCCAGTACAATGTAGCATATCGAAAGGGAAGAGCAAAAGcattaacatttaatgaaagGATTTAAAGGAAACAGAAAATCCGATGTTGGAGATTTGTAGGTAAGATGTATTGAGAGAAACTGCAAAGTATGGCAATCAGATCCAAAGTTTTAGTCAGGAATATATCGAAATACCATGCGGGGCTTCCACAGCGCTGGGCTCTTAGGGAAACCGATACATAGAGGCCTGAAAATGGggcaaaacaattatttattacgTGCAGTGCAGGGGTTAAACTATTCCATccctacagaaaaaaaaactcctacAAACAGACTATGATCACAACTAGACAAATCGACATCAAAATCGAAGTCCCAGTGCATAAGCAAAAGTCAGTTACCAGCAGTCTTGTCCCTGGCGCAGCGCACCCCTTGCGGTCGTCTGCCTCTTCCCAGAAAGTGGAAATTCACTTAggtcaccctcaccctcaccccaACAACCAAGATGTGCtctgcttcctgcttttattCAGGCACTGGCCAATCACTTCAggtcatataatatatatatatatatatatatatatacatacactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39403 lncRNA downstream 189617 3995888 ~ 3996123 (-) True G31471
TU39402 lncRNA downstream 249617 3935900 ~ 3936123 (-) True G31470
TU39386 lncRNA downstream 547499 3633856 ~ 3638241 (-) True G31454
TU39376 lncRNA downstream 583129 3602400 ~ 3602611 (-) True G31444
TU39363 lncRNA downstream 840500 3344857 ~ 3345240 (-) True G31431
TU39422 lncRNA upstream 21094 4228575 ~ 4229414 (-) False AMCG00019109
TU39449 lncRNA upstream 124690 4332171 ~ 4332577 (-) True G31516
TU39450 lncRNA upstream 127770 4335251 ~ 4335497 (-) True G31517
TU39451 lncRNA upstream 133928 4341409 ~ 4341653 (-) True G31518
TU39452 lncRNA upstream 143206 4350687 ~ 4350990 (-) True G31519
AMCG00019110 mRNA downstream 8902 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 119796 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 885654 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019102 mRNA downstream 1012304 3171748 ~ 3173436 (-) True AMCG00019102
AMCG00019098 mRNA downstream 1017610 3150830 ~ 3168130 (-) True AMCG00019098
AMCG00019109 mRNA upstream 12962 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019112 mRNA upstream 161666 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 249979 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 264675 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 559988 4767469 ~ 4791923 (-) True AMCG00019123
TU38988 other downstream 2007090 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2102469 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2102469 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2475197 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 2862144 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 725357 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9454635 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10284410 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10284410 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10744361 14951842 ~ 14991996 (-) True G33259

Expression Profile