RNA id: AMCG00019110


Basic Information

Item Value
RNA id AMCG00019110
length 906
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00019110
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4175475 ~ 4176838 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAACACAAGTCTGACAACCCTTCTGCCCACCACCACCATTACTTACTACTATGATGACTACAACACCAGTGATGATTTTGTGTACCTCTGTGACAAGACAGATGTCAACAGGTTTGGTGCGAGAGTGATGCCACTCTTCTACTACTCTATCTTCATGCTGAGCTTGTTCGGGAATGGCTTGGTCTTGTATATCATTTTTAAGTTCGAGAAAATGAACACTGTCACCAACATCTTTCTGCTCAACTTAGTAATTTCAGATTTGGTGTTTGcctcttcccttcctttctgGGCTGTGTACCACTCGTCTGAATGGATCTTCGGCAGGGCAATATGCAAAATAGTAGGCAGCGTGTATTTTATTGGGTTCTACAGTTCAATCCTGTTCTTGACGCTGATGACCTTCGATAGGTACCTGGCTGTGGTGCACGCCATCACCGCTGCCAAGAAAAGACGGACTCTGTATGCCTTTGTCTCGAGCGCAGTAGTGTGGTGCGTTAGCTTTGTAGCCACAGTGAAGGAGTTCATACTGTATGACGTTCAAGAAAACGGCACCTATGGGACGCTCTGTGAGGAGACTGGATATTCTCCAGAGATCATGGCTAAATGGCAGCTCGTGGGGTACTATCAACAacttattttgttctttctgtTCCCGCTGGTGGTGGTTCTGTATTGCTACATCCGAATCACCATGAGAGTGGTCCAGActaaaatgaaagagaaatgcaGAGCAGTAAAGCTCATATTCATCATTATAGTCACATTCTTCATCTGCTGGACACCCTACAATGTAGTCATCTTTTTAAAAACCCTACAGACATCAGTGAAGCGTACCTCTGATTCATGCAACAATGACATTGACTACGCCATTTATGTCACACAGCAGTTGAAATCCCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39403 lncRNA downstream 179352 3995888 ~ 3996123 (-) True G31471
TU39402 lncRNA downstream 239352 3935900 ~ 3936123 (-) True G31470
TU39386 lncRNA downstream 537234 3633856 ~ 3638241 (-) True G31454
TU39376 lncRNA downstream 572864 3602400 ~ 3602611 (-) True G31444
TU39363 lncRNA downstream 830235 3344857 ~ 3345240 (-) True G31431
TU39422 lncRNA upstream 51737 4228575 ~ 4229414 (-) False AMCG00019109
TU39449 lncRNA upstream 155333 4332171 ~ 4332577 (-) True G31516
TU39450 lncRNA upstream 158413 4335251 ~ 4335497 (-) True G31517
TU39451 lncRNA upstream 164571 4341409 ~ 4341653 (-) True G31518
TU39452 lncRNA upstream 173849 4350687 ~ 4350990 (-) True G31519
AMCG00019105 mRNA downstream 109531 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 875389 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019102 mRNA downstream 1002039 3171748 ~ 3173436 (-) True AMCG00019102
AMCG00019098 mRNA downstream 1007345 3150830 ~ 3168130 (-) True AMCG00019098
AMCG00019097 mRNA downstream 1081279 3077890 ~ 3094196 (-) True AMCG00019097
AMCG00019108 mRNA upstream 8902 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019109 mRNA upstream 43605 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019112 mRNA upstream 192309 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 280622 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 295318 4472156 ~ 4475867 (-) True AMCG00019116
TU38988 other downstream 1996825 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2092204 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2092204 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2464932 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 2851879 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 756000 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9485278 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10315053 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10315053 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10775004 14951842 ~ 14991996 (-) True G33259

Expression Profile