RNA id: TU39435


Basic Information

Item Value
RNA id TU39435
length 1116
lncRNA type sense_over
GC content 0.57
exon number 2
gene id AMCG00019111
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4319596 ~ 4368203 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCTGGGCCGGGAACGGGCGCTGGAGAGGGCCCGAGTTCAACGGCGGGACCCTGGGGAAGAGGCGCGGCAACGGCTCCGTGGCCCCACAGGAGAAGAGCCACAACCTGATCGAGGTGGCGGCCGACGCCCCGACCAAGAAGGGCGGCTACTTCGCGGCGCCGGCGCAGCCCGACCCGGACGACCAGTTCATCATCCCCCccgagctggaggaggaggtgaaggAGATCATGAAGCAGCACCAGGAGCAGCAGCGCCAGTACCAGGCCGAGCAGCTGCCCGACTACTACGATACGCCTCTGTGAGGACGGCGCCAGGCCGAGCCCTCCACCGCCCATCGCTCCCAACAGCTCACATCCCCGGGACAGAACCTTCTACAAACACTGCAGGCTGGTTCTTAAAGAATACGAACACTAATGTCGCTTTCGTTAACGCTTCACAACAGAAACAAGATCGAACACGCCAGGCTTCACTGTTAAAGGTAGTGGGGCTCATTGCGGTCATCAGCCACGCGTGATGCACTGGGGGGGACTGAGCGCCATGCAGTGCCTCACACATGATTAGCAATGACCCGGGCAGGCTGCGGACGACGCCGTGGGCAGAAAGGCAGAAAGGAGAGCATGCACACACTCATCTCATGGTTTTGTTTGCAGCGTGTCATGCGTGGGGCTCTGTCCGTCTGGCCCGTCACGTCACGGACGATTTGTAGAAATTTAATGACTAACTCCTAGGAGTTGCTTACTCTTTACCGTGACTTAGTCACTGAAATGTACTAATCTTCTCTGAGAGAAACGGTGATTTTTTTTCCGATTATTGTACATAGgataaatgttgtatagtgATGCTGTAAAGGGTGTCTGTCGTGTCCGAGGCTCAAGGGAGAGCAGAGAGCTGTGTTGGACGCAGTGATCGGGCCGGGTCTGGAGGCGCCGCCCGTGGCCTTCCCCCCCCCCGGCCCGCACACTCTCGCCGTCTCGTCTCCGGCACCCGCCATCACCGGCATGACTGTGTCCGGGTCAGCGAGGCAAGGAAGTTCCCTGcaaggaaatgtattaaagcaaaacacacaaaaagttcCATTTTTATGATATAATAAATCTAAAATTTACAAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39393 lncRNA upstream 502353 3864189 ~ 3864604 (+) True G31461
TU39364 lncRNA upstream 978272 3353340 ~ 3388685 (+) True G31432
TU39362 lncRNA upstream 1021713 3344755 ~ 3345244 (+) True G31430
TU39304 lncRNA upstream 1201285 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 1289801 3076916 ~ 3077156 (+) True G31351
TU39503 lncRNA downstream 379345 4747548 ~ 4747749 (+) True G31566
TU39572 lncRNA downstream 604769 4972972 ~ 5030095 (+) True G31622
TU39620 lncRNA downstream 725678 5093881 ~ 5127629 (+) True G31663
TU39654 lncRNA downstream 809731 5177934 ~ 5183039 (+) True G31690
TU39782 lncRNA downstream 1204569 5572772 ~ 5577699 (+) True G31799
AMCG00019106 mRNA upstream 84205 4268251 ~ 4282752 (+) True AMCG00019106
AMCG00019107 mRNA upstream 117214 4248393 ~ 4249743 (+) True AMCG00019107
AMCG00019104 mRNA upstream 731269 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019099 mRNA upstream 1081838 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019101 mRNA upstream 1091600 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019113 mRNA downstream 41780 4409983 ~ 4423443 (+) True AMCG00019113
AMCG00019114 mRNA downstream 62693 4430896 ~ 4433550 (+) True AMCG00019114
AMCG00019115 mRNA downstream 70229 4438432 ~ 4452436 (+) True AMCG00019115
AMCG00019118 mRNA downstream 111230 4479433 ~ 4491005 (+) True AMCG00019118
AMCG00019119 mRNA downstream 151854 4520057 ~ 4551901 (+) True AMCG00019119
TU39314 other upstream 1156274 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 1156274 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 1270531 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 2219394 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 3052298 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 3977252 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 3977252 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 4893171 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 4961276 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU71182 True 2832 TUCP 0.39 2 NC_047598.1 5900249 ~ 5930199 (-)
tiger barb (Puntius tetrazona) TU71182 True 216 lncRNA 0.50 1 NC_056704.1 25413651 ~ 25413866 (+)