RNA id: AMCG00019116


Basic Information

Item Value
RNA id AMCG00019116
length 2355
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00019116
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4472156 ~ 4475867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACAACAGAGAGCTCTACTGTAGCTTCCCAGCACTGCGAGCTAACTTCAAAATATGACTGTCCTAGAGGGGAGAAGGGACAAGAAGAGAAAAGCCAGGCCAGTATTATCCAGATGCACTCGGGCATGCCAGATGTTGTCGTGTTGCTCTCTGGGCTTGGCGGCGCTGTGGCAGCAGCTGACGCGTCATCGCCCCGCAGCCGCAGGACGCCCGGCCGGGATGGACGTGTCGCTGCTGCGGGAGCAGTATCACTGCCTGCGGAGGAGGCAGAGGTCCGAGACGCACGTCGTGTTATTCAAGAAAGGCATCAAAGACACGAGTGGAGAATCCTTATTCAGCACGATACCAATAAACCAGGAAGTGAATCGTGCAAAACCCCTTGAGGAACATATGGCGGTCAAAGGGATACAATTTGATTTTGTCAGTGACTCGGAGGATTATAGAACCCCTTGGCGCACACACCTTGGAATCCACCGCATGGCACATCCCAACCGCCCCCGAGAGGCAACCTCGGGCAAAACGTCCGACACAAACGCCATGACAGCCACCTCACCCAGGGAGCCAGGCAGCGCCAAAAGAAATCTTCTCCTCACCAAACATGCCTCTCTGGAAAACCCAGTGCCTTTAGAAAAATCAGAAAACCCAAACGACACCTGCCCAGCTGGGAGTGCCATCTTGTCTCAGAGGAAGTTCTCAGCCCCTGTCATCCTGTCCAGACAGCTGAGTCTGGATGAGTCCAGATCTTCACAAGCCTCCACTAAACTCCAATACTACCCCTTTCCACAGAAGAAACAGCCAAAACAGTCTGAAGCAGCCAGGAGACTTGGACTGTATGAGTCACATTAATGACTCTTCATTAATCAACTGGTTGCAGTGAAACCACATTGAGCAATAATTGGAAAACAGAAGGATTCAAGACGTTTTTCGAAACATCATTGGTTAATTGTATTAACTTGCACTTTTTGTGGGGAAAAATGTTACTGTATAAGATGTATTGTCAAAATTTCTAAACTGACAACCAACTGGAGGAGTCTTGAACACCACATATCTCTCccagttgtttttgtatttcactgtatactatgaattaaatatataatacctGGAGGTGTCTCGGTTATATTGTACAGCAGAAACACTTTAGTTTACAGATCTTCACACCTGACTATAGATACTTTgacttattttataatacatttaaagttcaatatttcatttgattaaaataaattaaatctgtctGGATATACAGAAATTACTGTTttggatatttattttgcagtcattttcttttgagtACCATACTGACATAACTGTCATTATAAACTGTGACCCACcagctaatacaaaactacaaaactatTCGCAGTCTCACAGTCAAACAGTTATTTGATTAACAGAAGCCTTCATTAATATGTAGCCCACATTTGAAACTAACATGTACGACGAGTAGAACTCAGTACAGGTGTTAAGGACTTAAATTGATTTGCCTGTGAActgtaaagaaacaataatatcATTCATTTTTAACCAAATAGTGTTCAGGTGGTTAATGTATAAAGAAGATGCGAGCCCAAGAAAGTTGAGAGAGAAGGCATGTTGGTAACCACTTTAACCAAGtatattaagttttattttatattggaGATGGTAACGGATGATGTAAAAAAGTGTTTGGTAAAGTGGATTTGATTTCCACCAGAAAGCTGAAAGAATTGTTGGTTGTGAGAATTAGttcaatttttaaatacagagccACAGTTTCTTAGCTGACACACTTCTTAAACCACCATCAATATTCTGAGCCAATATAGCCCCCTGTCTTTGCTGTTGAAAACATGGGACCTCTATATATGATAATATGTGCTTTTGGACtcaaatgtttattgtgtttggAAATGTAACATGACAAATGATTGAAATTTACCAAGATCAATATTTGTATACCCACAATATGATCAGTTGAAGTACATATTTATAAGTAAATTGGTCTGATGTGTGAGGCATGAACTGTGAATTTCACAATCAATCGCAAgtatttttgaataaaaaaagatgaatacttatctactGTAGATTTACATAAAGTAGTTTTCTTTATGCAAAGTATGATGATACCCAATTTAGTGTTTATAAGGCCTAGCCCATATGTATAGTTTTTATAGCCTacatatagttttttttatgtttgtgtgttttttcttttctgctaatattttaatcaacaaaTAGGCCTGTATTTGTTAACAGACAAAACCAGTTACTGTATACAGATATCCCagacaaatgtaatacaatctGTTCTGTAAAACACATTGCAGTCTGTTACTTGATGCCTTAATAACTGGTTTGGcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39459 lncRNA downstream 106755 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 107112 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 111810 4360107 ~ 4360346 (-) True G31523
TU39455 lncRNA downstream 115085 4356856 ~ 4357071 (-) True G31522
TU39453 lncRNA downstream 118536 4353418 ~ 4353620 (-) True G31520
TU39494 lncRNA upstream 131696 4607563 ~ 4607857 (-) True G31558
TU39509 lncRNA upstream 201776 4677643 ~ 4678067 (-) True G31572
TU39592 lncRNA upstream 465192 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 943129 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 943129 5418996 ~ 5444209 (-) False G31774
AMCG00019117 mRNA downstream 4108 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019112 mRNA downstream 88980 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019109 mRNA downstream 242165 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 264675 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 295318 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019123 mRNA upstream 291602 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 348082 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019124 mRNA upstream 382053 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019129 mRNA upstream 456482 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019128 mRNA upstream 467871 4943738 ~ 4949388 (-) False AMCG00019128
TU38988 other downstream 2293506 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2388885 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2388885 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2761613 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3148560 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 456971 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9186249 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10016024 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10016024 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10475975 14951842 ~ 14991996 (-) True G33259

Expression Profile