RNA id: AMCG00019117


Basic Information

Item Value
RNA id AMCG00019117
length 3170
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00019117
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4457460 ~ 4468048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCATGAAGAACATGTTCAGTCAAAGGTGAAGAAGCTTTTGAGAGAGGAGAGCATTCAGCTTTGGGTACCTCCCTACACAACTGAAGACAAAAAGGCAGGACCGCAAGCAATGAAGGTATATTGTAACTGGACCTGCTCCGTGCTGCGCAGGCTGAATCATCGGCTGCAGAATGAGCTTGCAGAGAGATATGCGGTTCAGCTCAGTTTCGATGTTACAGAGGTAGCGCACGCGTTGGAGGCCATCAGGGCTCAGGCTGTGAAGCGAGGGCAGGGCAACTCGACATACAGGGACACGGGGGTTGCAACGCTGGAGCTGCATTTGCCCCAAGCATTTAGACAGGATTGCTGAAAATTATGGAGTTCCATATATGAAGTTAATTTTAAGTGGAAAGCAATTGGTACCTGGTAAGACACTTGAGCAACAGAATGTTAAACACAACTCAAAGATCATGGTCTTGGAAGTAAACGAGACAGAAAAGAAGAAGATGGCCGTGGAAGAAGAGAAGCAGCGATCCCAAACAGAAAGTCTCAAGAGGACTAAGAAGGCTTTCCAGATTTTATCCGAAAGAGATGGCAGTGTTGACCCAGAAACCACTCCATTTTTGGAAATAGCCGATCAGAAGGGAAACCCCATCACCATTCCCGAAGTGGAGAGAAGGGCACTGATCCTGGCCATGGGATTGCACGAGAAGGGAAGGGCCTTAATGAAGAGGAAGCAGTACGAGGCTGCGCTGAACCACTTGCTGCAGGCGGATGAGCAGTTCAGTAAATGCGGCTCTCAGCTGCTGAACTCGGTGGACAACTACGCGGTTCTCCAGCTGGACGTCGCGTGGTGCTACCGGACACTGAAGAGTCTCGAGTGCCTGACTGACGCCAAGCAGAGGCTGCAGACGGCCGAGACGTGTTTCCTCAAATGCTACGGAGAGCGACGGGAGAGACTCTTACAGATAAAGGGCAGTACGGGCAGAGAAGAAGTCCTGTTCCTGAGGTTGTACCTGCTTCAGGGCCTCGTCGCCTACACTGAAGGCAACGATCAAGCCACGGAGAGATTGCTGAAGaaGGCAGAGGACTTGTACGGGCAGCTGTGCCTCGATACCGGTAAGATGATGGAACTGATGGCTCTGGGCTTCACGGAGCAGGAGGCCCGTCTTGGCCTGCGGGCCTGTCACGGGAACCTCAACGAGGCCGCAACGCACATCTCCCAGAGGAGAGAGGAAAAGGAaaagttgaggagggaggagcgTGAGAAGCGGAGGAGACGGGTGGAGAGCATCAACACATTGCGAGAGATGGGCTACTCGAAGAAAGACGCGGCCAAGGCACTGCACAGGACCCAGGGCGATCTGGACAAGGCCTTCCTGCTTCTTTTAGATTCGTTTCAGCCCGTCGAGGCGGCAAACAACAACCGAGGATCCGAGGACTCTTCTGATCTGGACCGGAGAGACATGATCGAACAGttGGTGTCTCTAGGCTTTGAGCGGGGAGCGTCCGAGGCGGCTCTGAGGTTCTCGGGCGGGAACATCCAGGTGGCCTCTCAGCTTCTGGCCCATCACGAGGGGAACCTGCCCCCCGACATCCTGTCCCCCTCCCCGCCCTCCTCACTGTCTGAGGAGCCCAGCACCTCATCCGAGTCCACAGGGTACGTGAGTCCAGGGGAGGACCAGATGGAGGTCGACCTGGTCAATGAGGTCCTGGATGATATTCCCAAACACGAGGAGGATTACCTGGACCtcaccctggaggaggagagcgaGGCGATGGCGCAGCTCAAGTCCTATCTGGATCGGGGACACCGGTCCCAGGACTGAGGGACCAGCTGACGCACAGGTACTGCACAGTGCTGGAGAAGAAGCACTTTCCCCGCCGGGCTTGAGATCAGAAATCAGATAATTCACTTATTTTTACAGTCTCTCTTATTGTTATACTTTCCCCCCCCACAAtaacttttaacatttatatatttttacgaAGCATATTTTGTTATGGGTTTCTGATCCATACTGTGACACAATTAAACGGCatactttattataattgtaatgacagaaaaaagtatttaaacttAGATTTTATCAGTATATGTCATTATTTCAATCTATCTGTCATTTTGCAGGGATGTgaatttatcattttttaatttatatcaaATGAACCCCCTGGTCTACTTTTACTCTAGTCGACCTTTTCAAGCAGAAGACAAGTCTTGGTGCCAAATGTGATCTGAAAATGTCAGAGCCGCCTTTGAATCTGTGATCTGTTAAGCACACGTTTTGGGACAGTGTTTTCATCTAAATGTGGCTAAACCGactgtacagaaataaaaaattaaaatctaaagagtgtagtttctttatttagattttttttgttttccaaatccTCGCTTTGCCCAGTTTATTGAAGCATGCATTGTGATCGTGCTGGTGGGGATGAAATTGGCATATTAAAAGTGTTTAATGACATGGATCTGTTTAGAAAAAGCTGTTCACTTTTAACgtgtttttaataatgctgTAATAACTAATTGGCGAAGTAACTAATTAAAGTCatgcttcctgtttcctgtaATTCAAACTGGGTCACATGCTATAGTatcatttttcttctgtgtacTCTCAGTGGTACAATATATCAGCCTCTCAGCTTCAAGACACTTTTCCCTCGAAGCATTAAAAGACACGAGACTTTACTCTTCGGTCTATGTGTCCGGCGTCCTATTATTGTACTGGAAAAGTTTGATTATGTTTTAGGGGAATCTTCTCTTTGACAtgttaaattttaattaattaattgatttgattggAAAAGCTCTATGTATACAAAGTATGAGTAGTCTAATGTATCTTATTTTAGTCATTCTTAatttgacacacacaaacacatccacaGTGGCTctgaagtataaaataaatgaaaaataataatgtgctttataaaaaCCAAGAAGTCTAGATGTTTATATCATGCCGGCTTGTCTTTCGGCTTGAAAGTGTAATCAAAGAAACTTAATAAAACATACTATGATTGTAATGTACAATGTGTTGACTAATTCATTAACGATACCTTCAGCGGGATTTAAATTCAAGACAGAACCTTACAGGCTTTAAGACATTTGGAGCCCTAGCATCATAATCTGTTCAATTTAGCATCTTCTGATTTCATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39459 lncRNA downstream 92059 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 92416 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 97114 4360107 ~ 4360346 (-) True G31523
TU39455 lncRNA downstream 100389 4356856 ~ 4357071 (-) True G31522
TU39453 lncRNA downstream 103840 4353418 ~ 4353620 (-) True G31520
TU39494 lncRNA upstream 139515 4607563 ~ 4607857 (-) True G31558
TU39509 lncRNA upstream 209595 4677643 ~ 4678067 (-) True G31572
TU39592 lncRNA upstream 473011 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 950948 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 950948 5418996 ~ 5444209 (-) False G31774
AMCG00019112 mRNA downstream 74284 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019109 mRNA downstream 227469 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 249979 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 280622 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 391516 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019116 mRNA upstream 4108 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 299421 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 355901 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019124 mRNA upstream 389872 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019129 mRNA upstream 464301 4932349 ~ 4940667 (-) True AMCG00019129
TU38988 other downstream 2278810 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2374189 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2374189 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2746917 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3133864 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 464790 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9194068 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10023843 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10023843 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10483794 14951842 ~ 14991996 (-) True G33259

Expression Profile