RNA id: AMCG00019122


Basic Information

Item Value
RNA id AMCG00019122
length 1734
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00019122
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4823949 ~ 4840696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGCCCTGAGGGATACCAATGTTATAAAGCAGGGAGAAACCCTAATTATGGCTACACCAGCTTTGACACCTTTGGTTGGGCATTCCTGGCATTGTTTCGTCTCATGACACAAGACTATTGGGAAAACCTCTATCAACAGACTCTGCGGGCGGCAGGAAAAACCTACATGATTTTCTTCGTGTTGGTCATATTCTTGGGCTCGTTCTACCTTGTCAACTTGATCTTGGCGGTGGTGGCCATGGCGTACGAAGAGCAGAACCAGGCCACCATCGCAGAGGCCTGGCAGAAGGAGAGAGATTTCCAGTTGGCGATGGAACATCTACGCCGGGAGCAGCAGGCAATTGTGAACAAAGTGCAGGAGACCGACTCCATTCTGTCCCCTGAAATGTCACCGTTCACCTTAAAAGACAGTAAGGAAAGAAGAAACACGAagaaaaggcataaaacattatcGGAGGAGGCCGACGATGACATAGACGAGAAAACAATAAGGttggacagagaggagaggccGAAGGTCCACTCCCTTCTCTCGCGGACCCTCTCTGCCCATCGGAGGGGAAGCCAGTGCAGCGTCTTCAACTTCCGTCCTCGAAACCGCGAGTCTGAGACGGAATTTGCGGACGATGAGTTCAGCGCACACGGAGACAACGACAGTCGGACGGGCTCCCTCATCTTGCCCTGGCACAGACGGCGGACTAGTGCTTTCAGCACGTGCAGCCACTGCTCCCAGGGGAACCACACCAGTCTGAACATCAACGGGAAGTTGAATGTCACTGTTGATCGCAACGGAGTGGCTTCTTTGGGTCCGCCTTCTTTGGCGTTACCCGTAGTCATGGTGGATAAAATCAACACAGACGACCTTATGCCTAATTGTACAAACGACATGTTAATTCCCCGCCGGGTGTCGGCAGAGTTTTTAGAGGCACCGTTTCAGAGAGAGCGAGCACTGAGCGCAGCGAAACTGGAAGAGGCTCATCAGAAATGCCATCCCTGCTGGTACCAGTTCGCCCAGCACTATCTGATCTGGGACTGCTGTCCGATGTGGCTGAAAGTGAAGAAGTATGTGCGGATCGGAGTCATGGACCCCTTCCTGGACTTGGCGATCACCATCTGCATCGTGATGAACACTGTGTTCATGGCGCTGGAGCACTATCCGATGACGCCGGGGTTCAAACATATGCTCAATGTGGGGAACCAGGTGTTCACTGGGATCTTCACAGCCGAGATGATTTTCAAAGTCATCGCCCTGGACCCTTACTACTATTTCCAACAGGGATGGAACATATTTGACAGCATCATCGTCGGTCTGAGCTTCATGGAGCTTGGTCTCTCCGGGATGGATAGTGGACTGTCTGTGTTGCGCTCATTCAGACTGTTACGGGTCTTCAAACTCGCAAAGTCTTGGCCAACCTTGAATACGCTGATTAAGATCATTGGAAACTCAGTCGGTGCCTTGGGGAACCTGACGTTGGTTCTGGCCATCATTGTCTTCATTTTCGCCGTGGTGGGGATGCAGTTGTTTGGGAAGAACTACCAGGAGTGTGTCTGCAAGATCTCTCGGGATTGTAAACTGCCCCGCTGGCACATGACGGACTTCTTCCACTCCTTCCTCATCGTCTTCCGGGTCCTCTGTGGAGAGTGGATTGAAACCATGTGGGATTGTATGGAAGTTGCTGGCCAACCCCTGTGCCTCATTGTCTTCATGCTGGTCATGGTGATAGGAAACCTT

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001947 heart looping biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39509 lncRNA downstream 145882 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 216092 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 458548 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 458905 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 463603 4360107 ~ 4360346 (-) True G31523
TU39592 lncRNA upstream 100363 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 578300 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 578300 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 699424 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 732101 5572797 ~ 5574265 (-) True G31803
AMCG00019123 mRNA downstream 32026 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019116 mRNA downstream 348082 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019117 mRNA downstream 355901 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019112 mRNA downstream 440773 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019109 mRNA downstream 593958 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019124 mRNA upstream 17224 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019129 mRNA upstream 91653 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019128 mRNA upstream 103042 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019130 mRNA upstream 149027 4989723 ~ 5006444 (-) True AMCG00019130
AMCG00019137 mRNA upstream 330924 5171620 ~ 5176944 (-) True AMCG00019137
TU38988 other downstream 2645299 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2740678 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2740678 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3113406 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3500353 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 92142 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 8821420 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9651195 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9651195 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10111146 14951842 ~ 14991996 (-) True G33259

Expression Profile