RNA id: AMCG00019123


Basic Information

Item Value
RNA id AMCG00019123
length 2166
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00019123
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4767469 ~ 4791923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGATGAGATTAGCCTCTCGGAAGGGAGCACAGTGGATCTCAGAAAgccaggagaggaggaggatgagttCTCAGAAATGGCTGAAGAAGCCATGGATCCAGAAGACTGTTTCCCTGAAATTTGCGTGCGTCATTTCCCATGCTGTGACATTAACACCACGCAGGGTGTTGGCCAAGCCTGGTGGAGGCTCCGGAAAACGTGCTACCGAATCGTGGAACACAGCTGGTTTGAAACGTTTATCATCTTTATGATCCTCCTCAGCAGCGGTGCGCTGgcatttgaagatatctacATTGAAAAACGGAAAGTTATTAAAATTGTCCTGGAGTACGCTGACAAGGTCTTCACCTATGTGTTTGTTCTCGAAATGCTCCTGAAGTGGATCGCATACGGCTTCAAGAAGTACTTCACCAATTACTGGTGCTGGCTCgattttttaattgtagatGTGTCTTTAATAAGCCTTGTAGCTAACACACTGGGGTACTCGGACTTTGCTGCCATCAAATCACTTAGGACCCTACGAGCTCTCAGGCCATTAAGAGCCTTGTCCAGATTTGAAGGCATGCGGGTTGTGGTAAACGCCCTGATCGGCGCCATCCCCTCCATCATGAACGTGCTGCTGGTCTGTCTGATCTTCTGGTTGATTTTTAGCATCATGGGGGTGAACCTCTTTGCAGGCAAGTTTGGAAAGTGCGTCAACAGAACAGGGTACGCATACAACGAAtcggaaataaataacaagagcGCATGTCTAGCCAGGAACAGTCCAGACTACAACTGGACCAAGGTGAAGGTCAACTTCGACAACGTGGGCGCCGGGTACCTCGCGCTTTTACAAGTAGCAACATTTAAAGGTTGGATGGAGATCATGTACGCTGCTGTGGATTCACGTCAAGAGGAGGAGCAACCAGTAAGGGAAATCAACCTGTACATGTACCTTTACTTTGTCATCTTCATCATCTTCGGATCTTTTTTCACTTTGAATCTCTTCATCGGTGTCATTATTGACAACTTCAACCAGCAGAAAAGAAAGATAAGTGGACAAGATATATTTATGACAGAGGAACAGAAGAAATACTACAATGCAATGAAAAAGCTTGGATCGAAGAAACCTCAGAAACCCATTCCTAGGCCACTGaaCCCCGTGCAAGGATTCTTCTTTGACCTTGTGGCGAAGCAAGCCTTtgacatcatcatcatgatcCTGATCTGCCTGAACATGGTGACAATGATGGTGGAGACCGATGAACAGGTCCCACAGATGAAGACGATCCTTGAAAACATCAACCTGGCCTTCATCGTGATCTTCACGGCGGAGTGCTGCATTAAAATCGTAGCACTGCGCTGCTACTTCTTCACTGTTGGATTactgatttgtatatttttgtatttttcaggaATCGTTCTTGCtgatattataaacaaatactttgTGTCACCCACATTGTTCCGAGTCATCAGACTCGCACGTATCGGACGTGTCCTCCGACTTATACGTGGAGCCAAAGGAATTAGAACTTTACTTTTTGCCTTAATGATGTCTCTTCCTGCATTGTTCAACATCGgtcttctcctcttcctcgtGATGTTCATCTACGCCATCTTCGGGATGGCAAATTTTGCCTACTTTGACCCCGAGGCAACGCAGTTTATTGAGTATGCCAAGCTCTCGGATTTTGCCGACACCTTGGAGGAGCCGCTTCGCATCGCCAAGCccaataaaattaaactaatctCCATGGACCTGCCCATGGTCAGTGGGGACAAGATCCATTGCCTGGATATCTTGTTCGCTTTCACCAAAAGGGTTTTGGGGGAGTCGGGGGAAATGGATGCTTTGAAGCAACAAATGGAGGAGAAGTTCATGATGGCCAACCCTTCCAAGATCTCCTACGAGCCCATCACCACGACCCTCAGACGCAAGCAGGAGGAAGTTTCTGCAATCATAATTCAGAGAGCCTACCGGAGTCACCTTGTCCGTAGGTCGATGAAGCAGGCCTCCTTTGTGTACCGCCACATAAACAGTGAGGGCAACATTCATGTGGAGGACCCACCTGAGAAGGAAGGTCTGATAGCATCCATGATCAAGGAGAACTATGGTCCTGAGATGGAAATGATGGAGACACTATCGTCGACTTCCTCTCCACCATCTTATGACAGT

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001947 heart looping biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39509 lncRNA downstream 89402 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 159612 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 402068 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 402425 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 407123 4360107 ~ 4360346 (-) True G31523
TU39592 lncRNA upstream 149136 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 627073 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 627073 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 748197 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 780874 5572797 ~ 5574265 (-) True G31803
AMCG00019116 mRNA downstream 291602 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019117 mRNA downstream 299421 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019112 mRNA downstream 384293 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019109 mRNA downstream 537478 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 559988 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019122 mRNA upstream 32026 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019124 mRNA upstream 65997 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019129 mRNA upstream 140426 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019128 mRNA upstream 151815 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019130 mRNA upstream 197800 4989723 ~ 5006444 (-) True AMCG00019130
TU38988 other downstream 2588819 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2684198 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2684198 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3056926 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3443873 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 140915 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 8870193 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9699968 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9699968 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10159919 14951842 ~ 14991996 (-) True G33259

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00033082 False 5799 mRNA 0.49 26 NC_007113.7 51888033 ~ 52020049 (-)