RNA id: AMCG00019124


Basic Information

Item Value
RNA id AMCG00019124
length 876
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00019124
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4857920 ~ 4875345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACCATGTTGTTACCACCGGGTCCTGACAGCTTGCGCCGGTTCACTCGTGAATCCCTGGCTGCTATCGAGAACCGGATTGCCGAGGAGCAGGCCAGGAACGCGAAGCAGGAGTACAGAGAGGATCTGGGCGACGTGGAGCTGCCGAAGCCACGGGCCGACCTCGAGGCCGGCAAGCAGCTGCCGCGCATCTTCGGCGACATTCCTTCCGAACTCGTTGGCGTGCCTCTGGACGATTTTGACTCCTACTACAACAACCAGAAGACTTTCATAGTACTGAACAAGGGAAAAACCATCTTCCGATTTAGTGCCACATctgcacttttgtttatcATGTTCACTATCCTGACCAACTGCGTTTTCATGGCCATGTCTGAGCAAGGAGAGTGGACGAAGTATGTCGAGTACACTTTCACTGGCATTTACACTTTTGAGTCACTGATAAAAATACTGGCCAGAGGATTCTGCATCGGACCGTTCACCTTCCTGAGAGACCCGTGGAACTGGTTGGATTTCAGTGTTATTGTCATGGCATATGTTACTGAATTTGTGGACCTGGGCAATGTCTCAGCTTTAAGAACATTCAGAGTTCTCCGAGCACTGAAAACTATCTCTGTCATTCCAGGCTTGAAAACCATTGTAGGGGCTCTGATACAGTCTGTGAAAAAGCTGGCCGACGTGATGATCCTGACAGTCTTTTGTCTCAGTGTGTTTGCCCTCATTGGACTCCAACTCTTCATGGGAAACCTCCGATACAAGTGTGTCAAAAGCCTTTACAACTGTACCGAAAACCCCAATACTACGGAATTCTTCTGCCACAACATGACCTGGCCCTCCTCAAAAGCTTTTCTCGAGGATGAAAGTAAGAATTAG

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39509 lncRNA downstream 179853 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 250063 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 492519 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 492876 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 497574 4360107 ~ 4360346 (-) True G31523
TU39592 lncRNA upstream 65714 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 543651 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 543651 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 664775 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 697452 5572797 ~ 5574265 (-) True G31803
AMCG00019122 mRNA downstream 17224 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019123 mRNA downstream 65997 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019116 mRNA downstream 382053 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019117 mRNA downstream 389872 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019112 mRNA downstream 474744 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019129 mRNA upstream 57004 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019128 mRNA upstream 68393 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019130 mRNA upstream 114378 4989723 ~ 5006444 (-) True AMCG00019130
AMCG00019137 mRNA upstream 296275 5171620 ~ 5176944 (-) True AMCG00019137
AMCG00019134 mRNA upstream 302548 5177893 ~ 5202366 (-) True AMCG00019134
TU38988 other downstream 2679270 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2774649 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2774649 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3147377 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3534324 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 57493 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 8786771 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9616546 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9616546 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10076497 14951842 ~ 14991996 (-) True G33259

Expression Profile