RNA id: AMCG00019130


Basic Information

Item Value
RNA id AMCG00019130
length 4806
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00019130
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4989723 ~ 5006444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCAGTGCTGGGAAGGCAGGAAGCCGTGTAGGCAGCGGCGGCAGCCcggctctcctctctctgtcaccGCCTGCGTCAGACGCCCGGGAGGGACTTTTCCAGTGACGAGCGGCCGCGCtgccgaggaggaggaggaccgCAGCCAGACGAGCAGCAGTCTAGACTATGCACGGATGAGCGCGGACGGGTGGGATACATACACTCATTTCTCTTGCGGATTTCCACCTTTTACCCCATGGTGGACGGATAGGCGAGCTCTTGTATTGCACCAAGGATTGATCCAGGATCGGGTTTCTTGCAGCTGTAAGCAGAAGATTGTCCACACACAACAGCTGAGCCATGAGTGGGACCCTCAAAAGAAAGTTCAACGAGGTTGAAGAAGACCAATGTTACTCCTCCTCTTCCCcgtcctccctctcctcttcgACCTCATCGGGGTGGGATTCGGATGGGGAGAGCTGCTACTCTGACACCCTGGACTCCAGGCCTAGCAATCCCAACTCTCCAGCGGCCAATTTTCCAATCACGTCCATCCTGAAGAGGACCAAGCGGGAGCACAAGGGCACCGTGCATTTCGACCACGTCACAGTGTTCTTCTTCCCGCGCTGCCAGGGCTTCACCAGCGTGCCGAGCCGAGGCGGATGCACCCTGGGCATGGTGAAGCAGCACAGCCTGTGCCGGCAGTACACACTGGCCGAGTTCGCCCTGGAGCAGCAGCACCTCAGACGGGAGAAACTCAAATACCGTCTCAAGGAGGAGAAACTGGAAGCCCTGAAACTAAAGCTCACCAAGAACGGCACCAGGGAGTCAGAAGAAGCCGATCAGCTCACGGTAGACGACATATCCGAGGACGACATTGATATCAGCGGGGTGGACCTGGAGGACGGCTTCTTCCTGCACCCGTACCCCTCGAAGAGGAGGCACTCACTGCTCAAGACCGCCGGCGTGAAGAAGATCGACAAGGAGGAGAAGCGTGAGCTGCACTCGATCCGCCTCTCCAGGGAGGACTGTGGCTGCGACTGCCAGGGCTTCTGCGAGCCTGAGACCTGCGGCTGCAGCCTGGCCGGCATCAAGTGTCAGATGGACCACTCTTCCTTCCCCTGTGGCTGTACCAAAGACGGTTGCGGCAACACGGAGGGCCGGATTGAGTTCAACTCCAGCCGCGTCCAGACGCACTACATCCACACCATCATGAAACTGGAGCTGGAGAAGAGGCTGGAGGAGAGTCCCGACACTGGGGACCAGGTGGGCCGGCTTCTGCCCCAGCCAGAAGAGAACCGCTTCGGCTTCCCCCGGGAGGAAGACCGGACTGTCCCTGCCAGTCCCACGTTCCACTTCAACACCGAGCTCGATCCGGTCGGGGAGAACAGCTGCAGCAGCGACATGACCGACTCGTCAAGCTTCTCCTGTCAGAGCGAGGACTCGGAGGGTCCCTGTGGTGGGAACAGCCCTCAGTCCGACAAGCCTCAGTCCGACGTGGACGACAACGGCCTGGCGAGGATCCTCAGCTTCAACGACTCTGATAACGAAGACtgttgcagcagcagcagcgactTCAGCTGCAGCCAACAGCAGCCGGTCGGCTTCGGGTACTTCAGCGCCACGGACTTCTTCAACGACAACATGGCGGACGAGGCACCGCCCCGGGTGAGCGCCGACGACCAGAACCGCAACCACGTCGACAATCGCCGATCAAGCATCTCGGACTTGTTGGACGAGAACGCCAACCAGGACACGACGTTGTTCCAGAACAGTAACTCGATCCCGCCTTTCCCCAACACCCCGTCCCCATCGGTCGATCACTCCTCGAAGAGCTACATGGACCTCAGCCTGTCCTCGGACTCGGACTTGGAGTTCTTCGATGGGTTCCCGGGCTACAGTCCCAGCCCGCTGTATAACTCGTTGAAAGAGTACGAGAATCTGGACAATTTCTATCAGTTTCAGCTGCCCAGTTACCCCAGCTTCCCCCAGGCCAGTGACCCCGGTACCTGCTTTTTGGAGTCGCTCATCGGCTTGTCCGAATCCGTCCCGGAACCCCCCGCCACTTTCACGGACAATCAGCTCCTGGAGGAAGCCATTAAGTCATCCATGATGGAGTCTGTGAAGGTCTGAATAACGGAAATCTGTGCAAAATGGACAATATAAATCTGTAATTGAGTGaggactgtatatatatttttaaacaaccaGTTTTAGAgcaaaatgtttgattttaaggaaagctgtgattttttttttttaatgcgattTCTTGTTGGCCTACTAAATGTTAGTAAATCAAATCCACTGTCATTGCAGTACAACATGGCAGCTAACATTGTGAAAAGCTGGAGAAGTCAATGGGTCAATTCATAGATCTGTCCTTAAATTTCTCTGTAACGTTAGCTTCTGATACCTTTTTGTAAGAAGCTCAGGAATACATTTTCCTCAGACGCGGAGCTGccacattttttgtaatttattttatttaaactaaaaaaaatatgggTCATCTTTAAATATCATTCAAAGTGTGCCTCAGGGACTTAGAACTCTTCAGCGAAGTGTGTTGTGACCATAGCTGTGATTCAATCTGAGTGTTTTCATATTTAGCCCTAAAAAGCACGCCATGTTCCACAGGCCCATTGTCATTTGACTGCAGTGATTCTAGAACAGTGTGATCGTTCCGACTGGAAGACACTTGAAATGTATCGAACACCAGTATTCCACCCAATTTCCCATTATGGGGCACACGGTACTtcggtggtgtgtgtgtggcaagAGACCCCGGGCAGCAACGTCAGCTGTGAAATCTCAACCCGATGAACTGCTgcagaaataagtattttgtggTCATcgtttctctctctgcccctttAGAGCCGTCTGTCTGGCGATGTTGTTGTGGTTTCAGAACAACAGTACAAAGTGTTTACGTAGTACGCCATGCTgagcatttattatttattacgaGCTACCAATTAATTTCTTCTGAAGCTTAACTTGAGATACAAAACTAATATAACTCTGTAATAcctaaaaaaaagtattacatgtacttttaatttattttgtgcatctgtatttattttatgaacacCGAACTTAAGAaagaggagaaggaaaaaaacatgtttcaagtAGCACTGTGGTTGTGTAATGTGGACCTGAAAGAGTCATCTATTCGACATGTTTaccaactaaaacaaatatacaagcatttagttttttgcagTTCAGTTGGCTTTTTGGACAGGAAACCCTCTTGGATGTTCTGGGAATCCACGGAGGATAGATGTCCGTAGTTTTGTGCAGATCCAGAGAAGATTCATAGAGCAAATTATAGTTTcctctttaaaacaaaccaacaaatgcatttcagcTTAAATTATCTTcctaatttcatttttttttttatttattaaatcaaatgagaGATTTGGTCATTCAGGTGACGGTGACCAAAGGATGTGCCTGTTATGCAGAGGAACCAATTTCAAACAGTCCCTGAAATGCACGGACGGCCTTATTCAGATGTAGGACTGTGAACTGTGTACTAATATCCTAGTGATCTACCTTCTAATCGTGATAAAACATGGGTCTATCGCATCGCTGCGTAAAATGTgtatatcaaaaataattattctaatttTTTGTaactaaattgtttatttaaaaataaatttaaaaattctAATGTGTATCGGggacaaattattttagaaGGATCAGATACTTGTATAAAACCTTTTCCAATTTTGAAGCATTTGTAATATAAAGagaactataaatataaatatatgcctATAGTGTTGAAGCATTAATCGGAATTTGAAGTCTTTATGATGGCAAAAGGGATTCGCTTATTTGTAAACCCGTCTTGCTGTTCAAAACTACACCAACCTATCCGCATATgtgtactttaaaatatgtttggtTGAAATAGAGTTCAGTCGCAAAgttactgaaaataattaattttgaatccCTGGTAATGGTTGGGAAAACTATTTATAAACCCTTTTCACTTTTGTTACAGGAATGTTGCCTGTTTTTTAGGTATAAACTGCTGGTTTCACATTAATTCACTGGCCAAGACGCTGAGCCGATATCAGAGGGTGAACATGCATTAAATCTCCCCTGTGTTGAAACTTTTAGGGCACTACAGTCAACTACATATCCTATCAATACTAATCTGGTTTTACGACCGTTTTGTTTGTTACAGGCATTATGCATATGCAGGCCCTtatctattatatttatttccacattccTCGGTTTCTCtgcatataatttatataaaaaatacaaaatgaacctTTGGAAATATGTGCGCTTTGCCTTTATATGCtttctttataatttatttaagttttgtgCCAACAAGAAGGCACTGTTTTGTAAATAAGTTGTCTTTTTCTTGTACAAATATTGCTTGTTATGAAGACATCAAATCTTGggtatttattaatgtactccaattattgtattattgatcTGAGGCTTTGCTTCACAATGTTCTTACTTTTGCCTTTTCTGTTGTACAGatttacttttctcttttttgctTAAAAGGTACTGCAGAGCAAAGATTGCTGCttcatattttttactttttcactgTAAAGAAATCATTGTTTATAaagctgttttcatttcatacaaGCAATATGACAATGTTTCCATCACTTCAAATAAATGTCCAAACTTTGATTGATTTtcctgttgtcatttttaaattttacgAGTGTGTTTCAACTACAAGGTTTCAATGCAGATAAAGTATTCACTGCTAATTTAGAAAGATGGATTTTGGTAAAATTCGC

Function

GO:

id name namespace
GO:0021536 diencephalon development biological_process
GO:0030901 midbrain development biological_process

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39592 lncRNA downstream 3339 4941059 ~ 4986384 (-) True AMCG00019128
TU39509 lncRNA downstream 311656 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 381866 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 624322 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 624679 4364196 ~ 4365044 (-) True G31525
TU39751 lncRNA upstream 412552 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 412552 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 533676 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 566353 5572797 ~ 5574265 (-) True G31803
TU39830 lncRNA upstream 743443 5749887 ~ 5752086 (-) True G31825
AMCG00019128 mRNA downstream 40335 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019129 mRNA downstream 49056 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019124 mRNA downstream 114378 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019122 mRNA downstream 149027 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019123 mRNA downstream 197800 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019137 mRNA upstream 165176 5171620 ~ 5176944 (-) True AMCG00019137
AMCG00019134 mRNA upstream 171449 5177893 ~ 5202366 (-) True AMCG00019134
AMCG00019138 mRNA upstream 229957 5236401 ~ 5243714 (-) True AMCG00019138
AMCG00019135 mRNA upstream 255271 5261715 ~ 5267644 (-) True AMCG00019135
AMCG00019136 mRNA upstream 262794 5269238 ~ 5278716 (-) True AMCG00019136
TU39603 other downstream 53727 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 2811073 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2906452 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2906452 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3279180 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 8655672 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9485447 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9485447 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9945398 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10686038 15692482 ~ 15721452 (-) True G33381

Expression Profile