RNA id: AMCG00019131


Basic Information

Item Value
RNA id AMCG00019131
length 6391
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00019131
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5125606 ~ 5139208 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTGAGGCATCCGAGCATTAGACAACACCGGAGCAGCCGAGGGCTACAGGGACTCAGTTCATTCATACAAAACAGCAAACACAAGGAATTCCTCATATCTCTGAGAGAAGAGGTTGTCGCTTTTGGATCTGAGAGAGACCCCCTCTGCTGGGACCCAAGGACAAGAGAAATCCTTGGCTTCTGTGAAAGAAAGATCTGCTCTCTATCTGTCAAGAGTAGCAGCTGCAGACGCACCAGGCAGCCCCGCAAAAGCAGTTACTTTGCCACAAGAGAGTGTTGCACTTCCAGGAAACACATCTAAAGCAAGCAAGGATGGCAGATACAACCAAACAGATAAAAGTTTCAGAAGCATCAAACGGGGCCCATCTGGAAGAAGATTTACCTCCCCCACCACCATCTGCTCAACAGGAACTTATACCGGCAACTGGAGATCAAAGCCCCTCATTCATACCTGTGCCTCCACCGAAAGAGACCTTCACTACTTTCTATCACCAGCGACAGAAAAACGAACTGAAAAGACTCTACAGACACATGCACCCCGAGCTGAGGAAAAACTTGGAGCATGTTGTGAACGAGGAGCTAGTGGAAGTGCTGAGCTCAGAAGACACACAGCTGGCCGCGGACGCTGGATATCAGGGAGAGGTCCAGTCCATGCGCTGGATTTTTGAGAATTGGACACTGGACTCCATTGGGGATCCTCATGCCACTAGAAAGACTGTGGATGAGGAAGCTGTCACTGGGGGCAATGTTAGAAGCACCTCCTCCGTGTTCGAGCAACAGGGTGCAGACCGGTCTCAGCTGCCCGGCTCCATGGAGGCAAGTGAGAGAGATCAAGTACGAGGAGACGTGCACACAGCCACGTGGCTGTTCGAGACACAGCCTTTGGACTCCTTAAACAAAATCTACCCCGAGGAAGGAGAACTGGTGGAGGCCGTGCTGAAAGAGCCAGTCCACCATGGGGACGTGACAGGTGCTCGACGTCTATTCGAGTCCTACCCATTGGACTCGCTGGGGCGCTGCAGCTCCGTGGAAGATTTCAGCCTGATGAAGCTGAAGTCTGAAATCCAGGAACAGAGAGGGGACATCCAAAAAACAGTGAAGCTCTTTCAGACGGAGCCTTGCTGCGCAATACGGGACGGCACGGGGGCCATTCACGAAATCAAGTCCATTTGCCGAGAGGAGATCGAGAGCAATGCTGTGAAGACCGCACGCTGGCTGTTTGAAACCCAGCCCTTAGATGTGATCAATAGGAAGGGCTCAGCCATTCAGATTATTCGAGGCATCTCTTTGGAAGAGGCGCAAAAGGGTGGGGTTGATAAGAAGAGATGGATGTTTGAGACTCAGCCCTTGGACACCATTCATGAAAGCATTCAAGTAGATCAATTCCAAGCCGCCACAGATGTAGTGGAGGGGGCTGATGTTACAAACAAATGCCAACTCTTTGAAACCCAGACACTCACGTCACTGAAAGGAGAGTCTTCAGAAGAAGCATCGACTAAGGAAGAGATAGTCAAAGGGGATGTGAAGTCCACACTTTGGTTGTTTGAAACACAGCCCATGGAAACCCTGAAGGACAACTATGAAGTCAGTTGTTTAAAGAAAGTTACCGTCACCGAGGAAGAGAGGGGAACGGTGCAGAACAGAAGGAATGTCTTTGAGACACACACCCTAGATAGCATTAACAAGGAGACATCTGAAGAGGAGATAACAAGTGGCATTCATGAGATAGAGAAGGGTGATGTTAAATCTTTTAAGCAACTTTTTGAAACCATTCCTCTGGGGAATATTTCACGTTCGGAAAATGAACCTGTAGAGAAGTCTGATGAGGTGGTGACTGGCAACGTGAAGAGTAACAGGGCAATGTTTGAGACCATGCCCTTGTACGCCATTAAGGACTGCTCAGGAAATTACCATGAGGTGACCACCGTAAGCAGGGAGCAGATTGTAAATGGAAATGTCCAAAACTACAAGTGGATGTTTGAAACTAGACCTTTAGATCAGTTTGAGGAGGGAAAAAGGAATGTTGAGATCATCAAAGGCATTACCAGGCAAGAAGATCAGGCTGCGGATGTCAAAACGGCCAAATGGCTTTTTGAAACACAGCCACTGGATACCATTCATTCACAAGTCAATGAGACAGAGGTGCATTCGTCAGTGCAAAAGGAAGTCTTGCAACAGGGGGATGTCAAGACATGCAAATGGCTATTTGAAACACAACCTATGgacattttatatgaaaaatctgaaaagaaacCAGAAGAAGAATTCATACCAAAGACTGATGTGAAATCCCACACCTGGCTCTTTGAGACACAACCACTGGATACCATAAAAGAGTCAAATGAGCCTTATCTGAAATTATGCAGTGTCAGTCAAGATGATGTGAAGACTGTTGATGTGAAAACAGTACGCCATGTCTTTGAGACAGAATCTTTAGACAACATCACCACAGAATCAGACACAGAGCAAGATGTTAGATATGTGAGTAAGGTTGATATCCAGTCAGGAGATGTTTCTAGGGTCAAAGAAATCTTTGAAACAAAGTCCCTTGATGAAATAGGAACAGCTTCTGTAAAGATCTCTGAAGAGGTGGACCAACATGAAAATATCCAGGTGGGATCTGTCCACAAGTTTACCTGGCTTTTTGAAAACCGCCTCACTGAAGCCAATAAAGGTCATGATGAGAGCAGAGTAACAACAACATGCACAGCGAGAGACGTTAAAGGGGGCGACGTTGGaaacaaaaagtttatttttgagACTTTTTCTCTGGACCAGATCCACGAGGAAGACAAATCACTCGAGTGCACGTCTGTTTCTGATGTGGAGCCTACTAGCAAAGGAGATGTCAAGTCTTGCACGATGCTGTTTGAAACACAGCCTTTGTATGCCATCAGAGACAAAGATGGACAATTTCATGAAGTCACCACTgtcaaaaaagaagaaatcatGAGTGCAGATGTGAGAGGGGCCAGATGGATGTTTGAAACAAAGCCCCTGGACACTATAAAGCCACAGGATGAGATTTTCGTAATCCGTGCTGTCACACAGGAGGATGTTCTCAAGGGCGATGTGAAAACAGCTCGTTGGAGGTTCGAAACGCAGCCACTGGATTCTCTCACAAGCAAAGAAGATCCCAAGACAAGACCCATAGAAGAGGTCCAAAGGGGTGATGTGAAGTTAAACAAGCAACTCTTCGAATCTCAGGAGGTGTCCCGTAAGAAGTGTGTGAGGATGGTGAGCGTCACAGATGTTCAGCAAGGCGATGTCAGGACTTCCACCTGGCTTTTTGAGAATCAACCAATCGACTCATTGAAGGGGGAGCTCCAAGAGAATGTCTCAGTACAGACTGTGCACAGAGAGGACAATCAAAAGGGGGACGTGAAGAGATGCACCTGGTTATTTGAAACACAGCCACTGGATGCTCTCAAGGAGCCTGGGTCTTCAACTTGCAGTAAAGTCCCAGAGGAAATGCCCCAGACAGATGTAAAGAGTACAACCTGGCTATTCGAGTCAACACCACTTGATAAACTCAGTTACCAAAGCACAGCAGAGACTGAGACCATGGTGGAGAGTGTGAAAGAGACCCTGTACCGCCTACACCACTTTAATGCCATCCATTCCCATGGTATCGCAATTGAAGCCAATGAGATGAGAAGTGTAACAATGGCAAAATATCAACTAGTAAGTACCGGGCCAGAAATTCAGAAGGAAGAGGTTGTTGAAGGGAACATCAAGGGAATCATGCTCCAGCTGTTGCAGAGGACAAATGTCAAACCCCAGGGTGTTCTTTTAAAAGAAGATGAGCAAGGGAACGTGCAAGTCACTCAACTGAAGTTAACTGTGGACTTGCCATCATCCCAGGTGGCTGCGAGCAAAGAGCACTCAAAGGCTGATGTGGCTCAAGCGATTGAAAGCCTTCTGAACCAGGacaagtctttgaggaaaggcATCTTAATTCAAGAAACTGAAAGGGGGTATGCTGAAATGACAGTTTACTCTCTCTTCAGTCATTTCGAGAGGCAGGAGGTCGTCAAAGGAGATGTGAAATCGACCATTGGTTGTCTTCTAGCTTCTGCCAAAGACCAAAGAACTGTGGCCTCATGCAGGCTGGAGCAAAATGAAAAAGGGAATGTTCATCTGTATAAGAGTTGCATCGAGAAGGGAGATCTTCAGTTCTTAAAAAGCCTTCAGGCAGATCCAGTGGAAGATGAGACTGATTCTTCCCCCAAGGAACAGATAGAGATTGTTCAAGGAGATGTGCAGGGAGCAAAAAGACATCTTAACCAACACAAGGAGCTGACTGAGCGAACAGTAGTGGACATTGTGCCCGGCGATGTGAAGAATGTCAAAAAAGTATTCTCGTGTGAAAGTGCCATGGACCAGAGCAGTGtacaaaaagaagaaatcaTCTGTGGAGATATATCTTCTGCTAAACAGTCACTTGGTCAGGCTATTAATCAACCAATTGTTGTGGAGAAAGAGGAAATAGTTTCAGGAGACATCAAGGCAACGTTGCAGGCTCTTGAACGGGCAAAGAATCAGAGCATGCAGTTAGAACGAGAAACCATTGTTCCCGGAACAATTTATGACTTAAATGTTACAATGCAGGAAACAACTGCTTCCACTGACACACAGGAAACGGAAAGTAGGTTAGCAGAAAAGGTATGTTCTGAACGACAGGAAACAGAGAAGGTCAGTCAAGCAGAAACAGGTGTACAGAGGGGAGCTCAAGAGATGTCTGATCTTCAAGCAGCAATGCAAAGCCTCAAACAGGCCACGGCCGAAGCACAAACCATCCAGAAAGTTGTGCAAGGGAAGCAGCAAACCATTACTCGAGGACAGGTGGAGCAGGAAAGACGAGTCGTTACTCAGAAGACCATTGGTATCCAGCAATCGAGGACCGTGCAGTCATCTATGCAGACTAATGTGCAAAGGAAGGAAACTGCTTGCGTTGCCAGAATAAAGGAATCAGCATCATCTTCAACAAGCCAGCAGAAGATTACATCAGTGCATCAAAAGGCCAAAAGCCATAGCCCGTCTGTGGAAGTCAGCTTCAACCGCAGCAGTGAGGAAGACAATCTCGCTCAGCCTGAAAACAAAGTTGTTCTCAGGCAGAAGAAAGTcagaagagagacagaaaatgaGCGTCGAGAAAGGCTATCAGTCCACAAGGATGAAATCATGAGAGGCAACGTACAAGCAGCGATGGACATTTTTGAAAACCTGAGGAAACGAGAGCAACTGCAAATCATTCTCTCAAAAGTGGAACAGATCGAAGGGGAGACATGCAAAGTCGACGTAAGATCCCTGAAGactttgtttgaaaatgttccCGAATGGATTGTTGCTCCGGGCAAGAATAAAACGTTTCCTAAGCCTAAAGGGGAAGTGAAAGTTGACAGGACAGAATCGCTGAGAGATGAAACTGAAAGTATGTCCTCTGTGGAGGTCGTGTTTGGGGATCTGGAAAGAGCGAGTGAAGAAATAATGAATTTGAAAGAACAGACTTTGGCTAGGCTTATGGATATTGAAGAAGCGATAAAGAAAGCTTTGTATTCCGTTTCTAATTTGAAATCGGAGTCTGACATTGCTGGACTGTCCGGGCTGTTTAAAGAATCCCTTGGAACCGAGCAGAGCACGGGCAGCAACAACATCAGAAAAATCTGCATCGCGTCCAGCAAAGCCAAAATGGAGACCGGGGGTGCACATACAAATGAGGATGCTGTGTCAGAAAAAGTGCAAAAGCCAGGTCTAGAGATCCCAGTTATCAAACCACGGGCTAGCTCACCTTCTTCCCCTTCCTACATCTCCATCCAGTCTGCTGCAAGAAAACCTACCGAGCTCCCCAAGGATGAGCAGCCCTCGTCAGCCGCTCCCGAGAAGGGTGCCGTGGCCCATTCGCAAAGCCACCGGGTGAACCCCAGCCCGTTGCCGCGCGAGTCTAAAAAACCAACGGGAAGCCCCGAGAGCTCTCGGGGCCCAACCGAAGAACTCAACACACATTCCCTGCAGCAAGAGACCCTCAACAGCATCTGTAGTCCTCTCAGCCAGAGAAGGCAAAAAAGCGTGCTGGAGGTAAAGACCGTCCCCGAACCGGCTGGGATAGTCGGCACAAAAACCGTGACCGAGAAATACGAGGAGACCGACTGCTTCGGGAACAGGTTCATATCTTCCAAGACGTCGACGATTGTGACCAAGCAGTCGGAAACGAAAACGTCTTCCACTTACGAGGTGGTGGCCAGCCCGACGAAATATGACATGATGGCGTCCCCGCTTGTAAAAAGACCCGTTCACCCCTTCTCAGAGAGTGCTCAGTCCAATTGCAAAGTCAATGAAGGTGGAGCAGTTTTTGTGACATTTGGCCACCcgaaaaatggaaaaaaataa

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05012 Parkinson disease
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39572 lncRNA upstream 95511 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 377857 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 757403 4366957 ~ 4368203 (+) False AMCG00019111
TU39393 lncRNA upstream 1261002 3864189 ~ 3864604 (+) True G31461
TU39364 lncRNA upstream 1736921 3353340 ~ 3388685 (+) True G31432
TU39654 lncRNA downstream 38726 5177934 ~ 5183039 (+) True G31690
TU39782 lncRNA downstream 433564 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 610609 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 791496 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 1025523 6164731 ~ 6167316 (+) True G31867
AMCG00019127 mRNA upstream 147716 4968121 ~ 4977890 (+) True AMCG00019127
AMCG00019126 mRNA upstream 162373 4950027 ~ 4963233 (+) True AMCG00019126
AMCG00019125 mRNA upstream 195372 4912531 ~ 4930234 (+) True AMCG00019125
AMCG00019120 mRNA upstream 382373 4733553 ~ 4743233 (+) True AMCG00019120
AMCG00019121 mRNA upstream 401825 4715962 ~ 4723781 (+) True AMCG00019121
AMCG00019133 mRNA downstream 1352 5140560 ~ 5142326 (+) True AMCG00019133
AMCG00019132 mRNA downstream 8507 5147715 ~ 5152017 (+) True AMCG00019132
AMCG00019141 mRNA downstream 142090 5281298 ~ 5305514 (+) True AMCG00019141
AMCG00019140 mRNA downstream 167205 5306413 ~ 5318056 (+) True AMCG00019140
AMCG00019139 mRNA downstream 181065 5320273 ~ 5325949 (+) True AMCG00019139
TU39314 other upstream 1914923 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 1914923 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2029180 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 2978043 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 2281293 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 3206247 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 3206247 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 4122166 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 4190271 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile