RNA id: AMCG00019143


Basic Information

Item Value
RNA id AMCG00019143
length 4159
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00019143
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5366466 ~ 5390362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCAATGAGCAGCTGTTAAGTCATCCAAGAGGAAGCTGCAACACACGCCCCGGAGAAACAGCAATCCACAAACACGTCTGTGGCGTTTCCACTCGGACCCTGTACTTGTGCTCCAAGCAGCCTGAGCCGCAATGCAATGCGTCAAAAGACAGCCGAGAAAAGCCAAACCGCACGACTTACTGTCCAAAGAGGAGATACAGCGCATCGCAACTGAAAATGGAAAGAAGCTAGgcaTGGAGGGCGATCCTGATTTGCAGCATCTCCTCACAGGCAATTATCTGTACAAAGTGAAGTCCAACTCCTGGAAGAAGGCCCGTTACTTCAAGCTGTTGAGTGACTGCAAGACAATATGGCAGGAGTCGCAAAAGCCTCTGAAGAAAAAGAGCTCACAGACTTTCTCCATCGAGGACATCGAAGATGTGCGTGTCGGGCGGCAATCCGAGGGCTTGAAGAAGTACACGAATGAATCCCTGGAGGAACAGTGCTTTTCCATCGTCTTCAAAGGTCAGCAGAGTAACCTGGACCTCATCGCTCCATCTGTGGAGGATGCCAAGCAATGGGTTTCTGGTCTGGATAAGATAAAAAACTACTTCTCTCACAATATGAGCAGTCAACAGAAGAGAAAGCATTGGCTACTAAGTTGTATGAAGGAGGCTGACAAAGACAATGACAATATGATGACATTAAAGGAACTGAAACACTTCCTAAAGAATGTCAACATTTCTGTGGATGACAACTACGCAAAGCAGCTGTTTATCCAATGTGACACATCCCAGTCAGGCACGCTGGAGGGGTCTGAAATCCTGGAGTTTTACAAGCGGCTGACCCAAAGAGACGAGATCGACACGATCTATGCCAAATACGCCACTTCGGACGGTAAAATGAGCGTGGAGGACCTGGTGAACTTCTTACAGAACGAGCAGCGAGAGCCTGTCTCAGAAAACGTTGCACACTCACTCATTGAACAGTATGAGGTTGATGAGAATGccaaacaaaatgaacacatgaCCAAAGATGGCTTCCTCATGTACCTGAACAGCCAACAGGGAATGATTTTCAACCCTGAGCATTACACGGTCTACCAAGACATGACCCAGCCCCTCAACCATTACTTCATCTCCTCCTCACACAACACCTACCTGATGGAGGACCAGCTGAAGGGGCCGAGCAGCACCGAGGCCTACATCAAGGCCCTTGTGAAGGGATGCCGCTGTGTGGAACTGGATTGCTGGGATGGGCATGATGGAGAACCAGTTATCTACCATGGATACACCCTGACCTCCAAAATACTGTTCAGAGATGTCATTAAGGCCATCAGTCAATATGCTTTCAAGACCTCTGAGTACCCAGTCATCCTGTCCCTGGAGAATCACTGCACTGTGGAACAACAGAACAAGATGGCCTCTCACTTGTGGAGCATTCTGGGGGACGCATTGCTCACGGAACCTCTGGGAGACGGTGTGCCCATGAACTTCCCCTCGCCCGAGCAACTTAAAGGTAAAATCCTTATCAAGGGGAAACGGTTAAACAAGCTGGAGCACAGGCTGTCCAATGGTCCATCTGTGGATGAGGAGATGGTGTCTGAGGAGGATGAAGCTGAAGATGCAGTTGCGGATgcggagaagaagaagaaaaagccaAAGGGCTCCAAGATTAAATTATCAATGGCGCTTTCTGACGTGGTCATCTACTGCAAAAGTGTTCACTTCTCtggatttgaaaatgcaatgaaaaaccAGTCCTTCTACGAGATGTCTTCCTTCAAAGAGGGGAAAGCTATAAAGTTAGCACAAGATTCAGGAAATGCATTTGTTCGTCACAACAATAAGCAGCTAAGCAGAATCTACCCGGCCGGCTCAAGAACCGACTCGTCAAATTACAACCCTGTGGAGCTGTGGAACGCAGGCTGTCAAATAGttgctTTGAACTTCCAGACCCCCGGCAAAGAGATGGATATAAACCAGGGCAGGTTCATGCAGAATGGCTTCAGCGGCTACAACTTGAAGCCCAAGTTCCTCCGAGACCCTAATACCGATTTCGACCCCAGTCACCCCTCACAGGGAGAGTGGATGAATCCCAAATCCCTCCACATAATGGTCATCTCAGCTCAGCAGTTGCCCAAGGTGAACAAGGAAAAACTCAACTCCATCGTTGATCCCTTGGTGAAAATGGAGATCTTCGGAGTCCTGCGTGACTGTGctgcaaaagaaacaaaacacatcgACAACAATGGGTTCAACCCAATGTGGAATGAAAAGTTCACTTTTAAGGTTTATGTCCCCGATCTGGCCATCGTGCGCTTTCTTGTGGAAGACTACGATCATGCTTCACATAACGACATGATTGGGCAGTTCACGCTGCCATTCAACAGCCTGCAGATGGGGTATCGACACATTCCTTTAATCAAGAAGAGCGGCGAACTCCTCTCCTCAGCCTCCCTCTTCGTCCACATCATGGTTACAGATTAATGGAAGAGATCTGAACTGAACTACACCAGCGCAATGCCAAAAACACAAGATTTCTACAGAGTCTGTAACTGGTTTGCATGCAAACAACCGAgattattcattgttttaacaCCATCATTTTAAAAGCCAAAAGGTAATCTATTCCATTCTTTTGATGTCTGAAGTAAGACAACCGCAGAATAGTTTTATAAAGTCTTAAATCTTTTTCCTTGCTTTTTAAACAGATTATTCTTTCATATATCCTGTCAAGcctttgagttttttttatataccaGGTATGAATCAGCACTGTATAATGAAAAGCCCAAGCACAATTTGTGGTGAATGTGCAAGGAAAACAGGATgacttttttgtattgtttaatgaagcaaatgttttatttttttaagaattagtTTTCTAATGTGTCTGGTCCTCCTTTTCTCTGATGTAGGCGATGTTTTCAACCCCCTATAAAGTCACTGATCCCGACtaccagcaaaaaaaaaaaaaaaaactcagtgtGGTTACTGTTGTATAGTCGAGTATAGCTGCCAACAGCTTGTCTTTGGATTTCTTAAATGGTACCATTCCCGATTGCTGATACGAAGAACTGAAGGTGTGTAGAATATTTCAGCCACCGTGTGGTCTACTTGCTCCATAAATATCTCAAGCACTCTCTACAGTGATGAGATGCATCTTTCCAAGTTTTCTAACCATACTAATGcacaagtttaaaaacaaaaacatttgatttaatggATCATTACTCAGTGAAATTCTgtcattgtaaaatatacacatgGTTCATAAATATTACTCATACACAGTTTAAGTTTTCATGTATCCTATTAAACAATGAACATGGTCTATTTTTTAACATAGCtcatcaattaattattttgcagcaTAGCTGCTGTTAAGATGTCTGTACTGATGAATATTATTTGGAGTCATCAGACTGTTATTGTTGTCTTTATAATTTtgcctcactgtatatttaatgtgcTTTTTCAAAAAAAGATACAATTTTATTCCTATCAATAACTATAGTACATTAATGTAAAATTTTGAAGTTAgtcaaatcagttttaaatgcattcctgCATCGCACAATGgattaatgtacatttatggACTGTTTTGACACTTGACACATTCTGTCcttcttaatttatttcttaaatcagcattttCTCTAGCataaacactaaaaaaaaaacctttttaagCCTGAATGGgtctaaaataaacaaagaaaaaaggaatataaataaacaaagtgcaGATTATTACATTAAAGGTGACATTTTTAGATGTTGATAAACTATGCAACAAACTCCCTTTAATGGACCACTTTTTGTAAAAGCggataagaataaaataatttttgaAACTCGAAGTCGACtcattatttatacaatatcttttattgcttttatgaTGTTTGTGGGGGACATACAAACATAACAGATTGAAGGGACTGTTCCGTTTTAgcattattcaatattttaatgaattggatCACACTCTGTAAATATGGTACGTGTTCACTTCCAAAACAATCATGCTTAAAACCTAATAAAAGTGATTGAACATttcttggtgtgtgtgtatgtagacGAATCAGCAGAATACAAACCTTAGGGTTTTACATCATTAAAGAAGCGGGAAGGAATGGTTTTGTAAAGGGAAGGGTACATGGAGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39654 lncRNA upstream 183427 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 238837 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 336371 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 618717 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 998263 4366957 ~ 4368203 (+) False AMCG00019111
TU39782 lncRNA downstream 182410 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 359455 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 540342 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 774369 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 797030 6187392 ~ 6187723 (+) True G31872
AMCG00019139 mRNA upstream 40517 5320273 ~ 5325949 (+) True AMCG00019139
AMCG00019140 mRNA upstream 48410 5306413 ~ 5318056 (+) True AMCG00019140
AMCG00019141 mRNA upstream 60952 5281298 ~ 5305514 (+) True AMCG00019141
AMCG00019132 mRNA upstream 214449 5147715 ~ 5152017 (+) True AMCG00019132
AMCG00019133 mRNA upstream 224140 5140560 ~ 5142326 (+) True AMCG00019133
AMCG00019146 mRNA downstream 143318 5533680 ~ 5542935 (+) True AMCG00019146
AMCG00019147 mRNA downstream 159231 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019148 mRNA downstream 175934 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019151 mRNA downstream 283615 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019154 mRNA downstream 540346 5930708 ~ 5939597 (+) True AMCG00019154
TU39314 other upstream 2155783 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2155783 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2270040 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3218903 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 2030139 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2955093 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2955093 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3871012 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3939117 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile