RNA id: AMCG00019145


Basic Information

Item Value
RNA id AMCG00019145
length 2384
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00019145
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5419981 ~ 5436120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttTCCCAGTCAAACAGCAGTCTAAAGAAGCAGAGGAGTAGAAGTATCTTCAGCACCTTTTTTTGCTGCTTTCGCAACTACAATGCGGACCCCCCctccaccaacaacaacacaagctCCCTCCCGGCACCGGTGGAGGAGAATGGAACACTCCCCAAGCCCCCAGCTAAATACCTCCTCCCCGAGATGAACATATCTGATTATGGCAAGAAGTGTGTGGTGATTGACTTAGATGAAACGCTGGTACACAGCTCCTTCAAGCCTATTAGTAATGCTGATTTCATCGTTCCTGTTGAGATCGATGGCACAGTGCACCAGGTTTACGTTCTGAAACGGCCGCACGTGGACGAGTTCCTGCAGAAGATGGGGGAGCTCTTCGAATGCGTTCTCTTCACCGCGAGCCTGGCGAAGTATGCAGACCCAGTGGCAGATTTGTTGGATCAGTGGGGGGTGTTCAGGGCGAGACTCTTCAGAGAATCCTGCGTTTTCCACCGAGGGAACTACGTCAAAGACCTGAGTCGTTTAGGGAGAGAGCTTGGCAAAGTTATCATAGTGGACAACTCCCCGGCTTCATACATCTTCCATCCAGAGAATGCAGTTCCCGTGCAGTCCTGGTTCGATGACATGACGGACACAGAACTACTAGACCTGATCCCTTTCTTCGAAGGACTGAGCAAAGAGGAGGATGTTTACAGCGTACTGCAGAACCTGAGGGGCAGGTAGCGTCGTCTCCGGGGCCCTCCCTCGGGAAGCACGGCTGAGCAGGACGAGGAACGTTGCCAGCCGGGACCCCGGGGCCGGTCGGTCAGTCCCTCACAATCACGACTCACGTCTTCACCAGCCGAAGCTTGACAAGGGGGCGGCTGTGCATCGCCAGGAGAGAGCGGCTTTGACCTCCGATGGACACGTTTTCCACGTACTCGATGATTTCAGGATGATTCTGAAGTCCCACATGGccagaagatttttttttttttttaattcggagggtggggggggaaataaaaaccaAATTTTTTATCTTAGACAAGAATTTTACTATCCTATTCAGTTCTTTCTATTAACCAAAAAcatttcgttttgtttttgagagaggagaaaaaaaaaaaaagcatttggatttttttgtctttcGTTGTTGCTATGCAGGAAGTCTCTCTTTTCGATCTACGGTAGTTTAAACGACCTGATTTTTTTCTTACCGAATGAAGTGCCTTTTCGAATGTTGTTTTTACGGGGGAAAAgttacattttgtatgcagcATATTTCCAGAGATCTTTTAACAAATATACGCTTTAAAAAGAAGTGGAGATGAATCTTTATAAAGCACTAATTTAtgctgaagatttttttttttttcttccctttaccttcattggtttttttttttctcaactcGGACGCTGGGTACACGTCTCCATCATATTCTGAATGGTGTTTCTTTCAAAAGGCTGATGCCTTTATATAGaagtgattttctttctttagtttattattatatgtaggAATGTGCTAGTGTCACTATAGcctttaattatattactggAATGCATTTGCAATTGTGAcgttttaagttattttattttgggctGGGAATAAGGTAGCAAGTGAAAGGAGAAGATAACCCACAGGTGGTTGAAAGTGTGCCAATGGTTGTGTTTCTACGTGATGCCAAGCACTGGATTACATTTCAGGAAGTGCCAGTTGTTAGATATTTCCCAAATGATTTCAGCTTGTTGTGTGAGATCTAAATTTGGGTATAGAGTATAAAACGAGCTTGCAGGGGCACAGCAAGAGTTCAGATAAAGGCctgttattttaattctttttatgttcagtggtgtgtatatttatgcacaaacattacattttaaactttaatttaagtctttaatacaatttcagctgtttgagatgtatttattttaaaccattttagaaGACCATTACACTAAAATAGCCAGTAGACTGTTTCTATTGATTTCAGTTTCCCACGGTCTCTGTGACAGGAAAGTGTCCTTTTAAAGCTTGCCGATGGTATACAATTGCAAATGTATCCTTTCATTGTTGACCCATTATTGTatggaaagttttattttttaaatcccgttttattttttttcttcttaaagaaCCGTCAGTAGGGGCTGGCGCTGTGggatttttacttttatttttagtttattttctgattcATGCTGCTGCTAGCGTACAGTCACCAAATGGAGTTGACCGCCGGCTTTTTAAACTGTTCCTCACCACCGTGCCTAAGCCTGGACATACGTACCACCACTGTATGCTGCAAATTTGGGCAATAAACTCAGAGGACAGACTGGTTGATGAAACACTCCTGGTTCCTGCACACTTTACAGCCTTTTTTTTT

Function

GO: NA

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39592 lncRNA downstream 433597 4941059 ~ 4986384 (-) True AMCG00019128
TU39509 lncRNA downstream 741914 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 812124 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 1054580 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 1054937 4364196 ~ 4365044 (-) True G31525
TU39766 lncRNA upstream 104000 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 136677 5572797 ~ 5574265 (-) True G31803
TU39830 lncRNA upstream 313767 5749887 ~ 5752086 (-) True G31825
TU39831 lncRNA upstream 348648 5784768 ~ 5802915 (-) True G31826
TU39835 lncRNA upstream 380956 5817076 ~ 5817433 (-) True G31829
AMCG00019144 mRNA downstream 14275 5391065 ~ 5405706 (-) True AMCG00019144
AMCG00019142 mRNA downstream 70467 5326041 ~ 5349514 (-) True AMCG00019142
AMCG00019136 mRNA downstream 141265 5269238 ~ 5278716 (-) True AMCG00019136
AMCG00019135 mRNA downstream 152337 5261715 ~ 5267644 (-) True AMCG00019135
AMCG00019138 mRNA downstream 176267 5236401 ~ 5243714 (-) True AMCG00019138
AMCG00019149 mRNA upstream 146108 5582228 ~ 5588342 (-) True AMCG00019149
AMCG00019150 mRNA upstream 199582 5635702 ~ 5671986 (-) True AMCG00019150
AMCG00019152 mRNA upstream 319285 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019153 mRNA upstream 511769 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019155 mRNA upstream 690073 6126193 ~ 6145464 (-) True AMCG00019155
TU39603 other downstream 483985 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3241331 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 3336710 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 3336710 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3709438 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 8225996 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9055771 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9055771 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9515722 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10256362 15692482 ~ 15721452 (-) True G33381

Expression Profile