RNA id: AMCG00019146


Basic Information

Item Value
RNA id AMCG00019146
length 2307
RNA type mRNA
GC content 0.54
exon number 17
gene id AMCG00019146
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5533680 ~ 5542935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGAAGGCTGCGCCCGCCCTGCTCGGCTCCCACGTCCTCCCTGCGGCCCGCCTGCTCGCCTCCCGGCTCTCCTCGGCGCCACACCCGCCCCACGGTCGGCTCCCAAGCAGGCTCTTCTCTCGGTCGGTGCCCTCGCTGAGAAACGAGCGGAAAAGCctgtggcagcagcagcagcttgcGGAAGGACGCAGTATGGACGGCAACATCGAAGAGCTGCTGGCTCCTCTGAGGCAGGCGGTGAAGGAGCAGGGCGACTTGGTGCGGAAACTGAAGGACGACAAGGCCCCCGATGTGGACGTCAGTAAGGCGGTGGCTGAGCTCAAGGCCCGCAAGAGAACCCTGGAGGCTAAGGAGCTGGCCCTGCAGCCTAAGGATGACATTGTGGACAGGCCAAAAATGGAGGACACTCTGAAGAGAAGGTTCTTTTATGACCAGGCATTTGCCATCTATGGGGGCGTCAGTGGGCTGTATGACTTCGGACCAGTCGGCTGTGCTCTGAAGAACAACATCCTTCAGATCTGGAGGCAGCACTTTATTCAGGAGGAACAGATCCTTGAAATCGACTGTACCATGTTAACCCCGGAGCCAGTGCTCAAGACATCTGGCCATGTGGACAAGTTTGCCGACTACATGGTGAAAGATGTTAAGAACGGAGAGTGTTTCCGTGCTGACCATCTTTTGAAAGCTCACCTTCAAAAGCTCATGTCAGACAAGAAGTGTGCTGCTGAGAAGAAGGCTGAAATGGACAGTGTCATCACTCAGATGGACAACTACACCCAGGAAGAGTTAGCTGACCTCTTTGTAAAGTACAATGTCAAGTCTCCGGTCACAGGAAATGATCTGAGCCCCCCCATCTCCTTTAACCTGATGTTCCAGACCTCCATTGGACCAGGTGGAAACATGCCAGGCTATTTGAGGCCTGAAACTGCTCAGGGAATCTTTTTGAACTTCAAACGTCTGCTCGAGTTCAACCAGGGGAAAATGCCCTTTGCTGCCGCCCAGATTGGGAATTCCTTCAGGAATGAGATCTCTCCGCGCTCCGGCCTCATCCGAGTCCGGGAGTTCACCATGGCAGAGATTGAGCACTTTGTGGACCCCAACGAGAAGAAGCACCCCAAATTCCAGAACGTGGCCGACCTGGACATCCTGCTGTACTCCTCCAAAGCCCAGACCAGCGGGCAGTCCGCGTCAATCATGCGGCTGGGGGACGCGGTCGAGCAGGGTGTGATCAATAACTCCGTCCTGGGCTATTTTATCGGGAGGATCTACCTGTACTTGACCAAAGTGGGCATCTCCAAAGACAAACTGCGCTTCCGTCAGCACATGGACAACGAGATGGCCCACTACGCCTGCGACTGCTGGGACGCAGAAACCAAAACCTCTTACGGATGGATTGAGATCGTGGGCTGTGCCGACCGCTCCTGCTTTGACTTGCTGTGTCACGCCAGGGCCACCAAGGTCCCTCTTGTGGCAGAAAAGGCTCTCAAAGAACCCATATCCTTTTCTGGTTTTTtgtattttgtgtttgtaaccTTAACTGCTTCACACAAAACTGTCAACGTGGTTCAGTTTGAGCCCAACAAAGGAGCCATTGGCAAAGCATACAAGAAAGATGCCAAACTGGCAATGGAGTACCTTGCGATCTGCGATGAATGCTACATCACGGAGCAAGAGAAACTCCTCAGTGAAAATGGAGAGTTTGCCATCGAGACCGAAGGGAAGACTTTCACATTAACCAAAGACATGGTCAGTGTCAAGAGATACCAGAAGACTCTGCATGTGGAAGAAGTCGTCCCCAACGTGATCGAGCCCTCCTTCGGCATCGGACGGATCATGTACTCGATTTTTGAACACACATTCCACGTCCGAGAGGGCGACGAGCAGAGAACGtatTTCAGCTTCCCAGCGACAGTGTCTCCCTACAAATGCTCAGTCCTTCCTCTGAGCCAGAATCAGGAATTCATGCCTTTTGTCAAAGAACTGTCTGAGGCCTTGACCAGAAATGGAGTTTCCCACAAGGTTGATGATTCTTCTGGGTCAATCGGGCGGCGATACGCCAGGACGGACGAGATTGGCGTGGCTTTTGGCATCACCATTGATTTCGACACCGTTAACAAGACCCCTCACACGGCGACTCTGCGAGACCGTGACTCCATGCGCCAGATTAGGGCTGAGGTGACGGAGTTGCCCACGATCATCCGGGACCTGGCTAACGGTGCCACTACATGGGCCGAAGTGGAGACCAAGTACCCCATCTTCGAGGGACAAGAGACgagcaaaaaggaaaataccGAGGAATAA

Function

GO:

id name namespace
GO:0006426 glycyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004820 glycine-tRNA ligase activity molecular_function

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39654 lncRNA upstream 350641 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 406051 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 503585 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 785931 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 1165477 4366957 ~ 4368203 (+) False AMCG00019111
TU39782 lncRNA downstream 29837 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 206882 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 387769 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 621796 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 644457 6187392 ~ 6187723 (+) True G31872
AMCG00019143 mRNA upstream 143318 5366466 ~ 5390362 (+) True AMCG00019143
AMCG00019139 mRNA upstream 207731 5320273 ~ 5325949 (+) True AMCG00019139
AMCG00019140 mRNA upstream 215624 5306413 ~ 5318056 (+) True AMCG00019140
AMCG00019141 mRNA upstream 228166 5281298 ~ 5305514 (+) True AMCG00019141
AMCG00019132 mRNA upstream 381663 5147715 ~ 5152017 (+) True AMCG00019132
AMCG00019147 mRNA downstream 6658 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019148 mRNA downstream 23361 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019151 mRNA downstream 131042 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019154 mRNA downstream 387773 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019156 mRNA downstream 426507 5969442 ~ 5980521 (+) True AMCG00019156
TU39314 other upstream 2322997 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2322997 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2437254 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3386117 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1877566 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2802520 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2802520 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3718439 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3786544 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile